PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s815451g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 568aa    MW: 64309.6 Da    PI: 4.6031
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s815451g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.2e-26239292155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv+av+q+ G++k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  PDK_30s815451g001 239 KARVVWSVDLHQKFVNAVNQI-GIDKVGPKKILDLMNVPGLTRENVASHLQKYRL 292
                        68*******************.********************************8 PP
2Response_reg783.4e-26591671109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + +
  PDK_30s815451g001  59 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEMLRERKdrFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRVMKGV 148
                        89*********************.***************888778**********************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el +
  PDK_30s815451g001 149 QHGACDYLLKPVRMKELKN 167
                        ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-51753IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.4E-61846No hitNo description
SuperFamilySSF521721.71E-3456180IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-4456187No hitNo description
SMARTSM004486.6E-3157169IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.59458173IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2359167IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.93E-2860172No hitNo description
PROSITE profilePS512949.287236295IPR017930Myb domain
SuperFamilySSF466892.42E-18236296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28238297IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-23239292IPR006447Myb domain, plants
PfamPF002499.1E-7241291IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MVMENLSVSS RTEAFPVGLR VLVVDDDPTW LKILEKMLRK CSYEAASSRT EAFPVGLRVL  60
VVDDDPTWLK ILEKMLRKCS YEVTTCGLAR VALEMLRERK DRFDIVISDV NMPDMDGFKL  120
LEHVGLEMDL PVIMMSIDGE TSRVMKGVQH GACDYLLKPV RMKELKNIWQ HVYRKKMHEV  180
KEIEGHDINE DLQIRNGPED FEDRLVLNGT DMNSVRKRKD VDSKEHPDQE FCDPATVKKA  240
RVVWSVDLHQ KFVNAVNQIG IDKVGPKKIL DLMNVPGLTR ENVASHLQKY RLYLSRLQKQ  300
NEGRTFSGNM QSDFSSQDVS ENFDLHNSTQ TQQNGASSKY IYTNQKIPEQ GIAPDACADD  360
FKGVVSLQVT DRKQALLSDV PDSQKPDKEP QGFVDHFHTP TSLISITCNS EDDMSGLSEF  420
NPVQTNQKSS HSKAISPMSF MTNPVSVQVD SGLSSTQDFG ATCEEDGETN KKEYYYDQTC  480
SGRIPPPLEL SLKNETDLAS LPEELQLCSL QGIGCFENLG LNSMEIFQYN DSTSAIEVYS  540
NWNDGLEFNC DYLYDSVDYP MIDECLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18238297463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907773.10.0two-component response regulator ORR26 isoform X1
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2H3YK860.0A0A2H3YK86_PHODC; Two-component response regulator
STRINGXP_008799983.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-122response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]