PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s807001g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 340aa MW: 38238.1 Da PI: 7.3387 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 248 | 270 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+ F++ + H++tH PDK_30s807001g002 248 FKCGICDVEFPNAQAFGGHMSTH 270 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.286 | 248 | 275 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-5 | 248 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 250 | 270 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
METTLTSPQK QSTSPNIMPM EPLVLTAPEE LSDHVSKVNN SQNSQYPFDF LPTNTQLAFI 60 PNSSLSSISH GNYPAAISTT TTPVEIGSMN SSVMTSQSLP QFPHTSLPGM PNENFYQLAY 120 GCPPQQVPQE NLYYFVGGHP PKQYLKERNN LYHVVGGFSP QKQPSRLNLD LIDGCPSQNL 180 QQQQISLMGY TNLKNQLQYI DQHTFFSSHS LDLRYLHPTG IPMDSNWEAI YAYLLGKVRP 240 GPDIANIFKC GICDVEFPNA QAFGGHMSTH RKDKKRKKLI ATKHQFKKAD SKPSYSTNIR 300 EAIVLPSSRK LTLLKEVENE KNDMKDKEKY ECESEESVSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 277 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-08 | zinc-finger protein 10 |