PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s804301g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 281aa MW: 31604.4 Da PI: 6.9168

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s804301g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l d++k +G g+W +++++ g++R++ +c++rw++yl PDK_30s804301g003 14 KGPWSATEDKILTDYIKAHGEGRWGKVPNRAGLNRCGRSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.8	1.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt+ ++k++w+++l PDK_30s804301g003 67 RGNISLEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDTEIKNYWNTVL 112 78999***************.*****.**********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-21	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.6	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.47E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.32E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.022	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.90E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDRSACYSKE GLNKGPWSAT EDKILTDYIK AHGEGRWGKV PNRAGLNRCG RSCRLRWLNY 60 LRPDVKRGNI SLEEEDLIIR LHKLLGNRWS LIAGRLPGRT DTEIKNYWNT VLKKKVQARS 120 VPLTNLVCLN QDEERKSKNK TSVQAPSFEN PTQSSEAEVS LNQRGNQNAH KNGLKSLVIE 180 DLAPDSFLLA PQDYDLLNLR TGFDIEGLSQ PSLPDSQFFQ LLGGNIQQDM RDCDNGKLSA 240 SFDENVFSSR GVFENWVGTD HIQPYGSLDL GSLAAFFESE S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	9e-27	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786612.1	0.0	transcription factor WER-like
TrEMBL	A0A2H3XPC4	0.0	A0A2H3XPC4_PHODC; transcription factor WER-like
STRING	XP_008786612.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25480	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	6e-56	myb domain protein 3