PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s804151g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 377aa    MW: 41216.3 Da    PI: 6.7857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s804151g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-1698143147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  PDK_30s804151g001  98 RGHWRPAEDSKLRELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 143
                        899*****************************.***********996 PP
2Myb_DNA-binding56.37.5e-18150193146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s804151g001 150 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 193
                        789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4293144IPR017930Myb domain
SMARTSM007174.1E-1497146IPR001005SANT/Myb domain
PfamPF002493.9E-1698143IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-2898191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2699151IPR009057Homeodomain-like
CDDcd001674.69E-13101142No hitNo description
PROSITE profilePS5129426.953145199IPR017930Myb domain
SMARTSM007179.7E-15149197IPR001005SANT/Myb domain
PfamPF002491.7E-14150192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-21152198IPR009057Homeodomain-like
CDDcd001675.63E-12152192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGSLSINPTS SVESNCSNKG SEKTFWTSSF RRNYIGLEGH PPQSSEDEGG KCSDAIYGFG  60
ENHINAIGEE SPDGENTNEG SLAGKEAAEY GQSKLCARGH WRPAEDSKLR ELVALHGPQN  120
WNLIAEKLEG RSGKSCRLRW FNQLDPRINR SAFTEEEEEK LMAAHRLYGN KWAMIARLFP  180
GRTDNAVKNH WHVIMARKYR EQSNAYRRRK LSQAVLHRGL EDAAATSVTC GFNSSLHLPF  240
AHLSLAMGGS NGSYHSATGA GAEDSVSCYG GFCSAQAPYD FLSGIKAQGK TTSFHGTNNW  300
RWDRPRDESF MGSNSQRPFM VAMQQPSYLS DFSDCSASGA SATESSSSSS FKENGENGQS  360
EATTTPPFID FLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-33981987107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625922e-84KM662592.1 Ananas bracteatus clone 46432b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806024.10.0transcription factor CSA isoform X1
TrEMBLA0A2H3YZI70.0A0A2H3YZI7_PHODC; transcription factor CSA isoform X1
STRINGXP_008806024.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-74myb domain protein 105