PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s803861g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 32585.2 Da PI: 8.9425 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL+++++ ++++ +i+e+d+yk++Pw+Lp k+ +ekewyfFs+r++ky++g+r+nra+ sgyWkatg dk++ PDK_30s803861g001 8 LPPGFRFHPTDEELVMHYLCRRCAMLPISV-PIIAEIDLYKFDPWQLPGKALYGEKEWYFFSPRERKYPNGSRPNRAAGSGYWKATGADKPI 98 79****************************.88***************7777789************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + v +kk+Lvfy g+apkg+k++W+mheyrl PDK_30s803861g001 99 GS--PKPVAIKKSLVFYAGKAPKGVKSNWIMHEYRL 132 99..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-61 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSVGDLQLPP GFRFHPTDEE LVMHYLCRRC AMLPISVPII AEIDLYKFDP WQLPGKALYG 60 EKEWYFFSPR ERKYPNGSRP NRAAGSGYWK ATGADKPIGS PKPVAIKKSL VFYAGKAPKG 120 VKSNWIMHEY RLADVDRSVR KKNSLRLDDW VLCRIYNKKG GVENLTGPEW NSAGSRNLGP 180 APGSPEKKPV IVSHVPPPFS SPAPASTDLF CFDASESLPR LHPDSSCSDH VLSSEFTCER 240 EVQSRPSWGA WEKALGVGVH NEVAAGAFPP LSPPGAFRDP LQDAFMMYPQ KPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-76 | 4 | 163 | 11 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807657.1 | 0.0 | NAC domain-containing protein 48-like | ||||
Swissprot | Q7F2L3 | 1e-124 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | A0A2H3Z3H8 | 0.0 | A0A2H3Z3H8_PHODC; NAC domain-containing protein 48-like | ||||
STRING | XP_008807657.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-115 | NAC family protein |