PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s801031g010
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 313aa    MW: 34845.6 Da    PI: 10.1275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s801031g010genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001931123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C++CgksF+   +L  H+r+H
  PDK_30s801031g010  9 HCCKICGKSFPYGRSLGGHMRSH 31
                       56********************9 PP
2zf-C2H219.72.3e-06197219123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C k+Fs++ +L+ H ++H
  PDK_30s801031g010 197 HECPICRKVFSSSQSLRGHRKSH 219
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-5832No hitNo description
PfamPF139125.7E-10932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388936IPR007087Zinc finger, C2H2
SMARTSM003550.036931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801031IPR007087Zinc finger, C2H2
PfamPF139129.7E-11122146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-9122145No hitNo description
SMARTSM003550.098123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-9192219No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5195219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429197219IPR007087Zinc finger, C2H2
PfamPF139126.3E-9197219IPR007087Zinc finger, C2H2
SMARTSM003550.0012197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERDRKLKHC CKICGKSFPY GRSLGGHMRS HLALNSSTEV EARLQSSRSS IWVETGYDLR  60
ENPKKTWRLW DSGNHGSQGS PRHDKLCRKC GKGVGKYSKS GSRSEFDVSK DDFSKVSMKR  120
GRYECTACNK FFPSYQALGG HRASHKRMKV LFASRIEASN NSLEIDASIK PARLEELVEK  180
KVGLDTSSEA SKKVKSHECP ICRKVFSSSQ SLRGHRKSHL VASSDGGGLT HQTIVIQQQP  240
LGMPFDLNLP TPTNEGSSNT NGNLKFRSCY IQFILLDMLA RPWLHLSFTA PNVEVYADSP  300
QSLIGIILGN HGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664693.11e-120zinc finger protein ZAT1-like
TrEMBLA0A3Q0ICF11e-118A0A3Q0ICF1_PHODC; zinc finger protein ZAT1-like
STRINGXP_008805104.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-22C2H2-like zinc finger protein