PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s800981g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 287aa    MW: 31596.8 Da    PI: 8.1284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s800981g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015222244223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+ +Fs+ s L  H  + H
  PDK_30s800981g002 222 QCTQCPARFSTVSALIEHAEKsH 244
                        7*****************98888 PP
2zf-C2H216.62.2e-05259281223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C++ F+++ +L+ H  + H
  PDK_30s800981g002 259 VCPKCSRGFRDPVLLVEHVERdH 281
                        7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.49E-12652No hitNo description
PROSITE profilePS510397.781059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.3E-101153IPR000058Zinc finger, AN1-type
PfamPF014284.3E-141351IPR000058Zinc finger, AN1-type
SMARTSM001542.0E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.3E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.7E-993143No hitNo description
PROSITE profilePS510398.1998146IPR000058Zinc finger, AN1-type
PfamPF014281.9E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.13101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.58221249IPR007087Zinc finger, C2H2
SMARTSM003550.13221244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM0035511258281IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG MHCSVEDCQQ IDFLPFTCDR CNKVFCLEHR SYIKHLCPNA NQQDVTVLVC  60
PLCAKGVRLI PNEDPNITWE SHVNSDCDPS NYQKATKKKR CPVPGCKEIL TFSNTLRCRD  120
CTKEHCLKHR FGPDHKCPGP KKPDSGFPFI GLLNRSQKRE SSSNNCSNGS SWWGSGLLSA  180
ASNLRASAEA GMQKLGNATT QALQRAKDGT PQSSSGGALL EQCTQCPARF STVSALIEHA  240
EKSHQRNTQQ AHSRAMIDVC PKCSRGFRDP VLLVEHVERD HGGSSIA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697408.10.0LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-149SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2H3ZML80.0A0A2H3ZML8_PHODC; LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_008784866.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]