PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s800801g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 309aa    MW: 32618.4 Da    PI: 8.6843
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s800801g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-1857117257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  PDK_30s800801g004  57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 117
                        89*****************99*************************************995 PP
2Wus_type_Homeobox112.71.9e-3656119265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k+
  PDK_30s800801g004  56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKH 119
                        689**********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.51153118IPR001356Homeobox domain
SuperFamilySSF466897.27E-1353123IPR009057Homeodomain-like
SMARTSM003892.1E-955122IPR001356Homeobox domain
CDDcd000862.67E-956119No hitNo description
Gene3DG3DSA:1.10.10.602.1E-756123IPR009057Homeodomain-like
PfamPF000461.4E-1557117IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASSNRHWPS LFKSKPCNTH NQWQHDVNAS SLLSGGCQKT TYTSAIAGCE ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRKIR AQLQEYGQVG DANVFYWFQN RKSRSKHKHR  120
HLQSSRPHPR SATTAPSPLA TSAPATAATS SSSSSSDRSS GSDKAIPSVA SIGGLSGGTN  180
LPASMSLAAN QLQFPVPLEF GGEAFFLRAP QTYCFPPADL TGTVGALPEQ GTCVRSALWS  240
ELMGYEGCKS GEDEAKTTMQ LHHSFSAAAA ASTTVASVGA AVGVSCGANP VGAATSASVA  300
SPITELQGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017702054.10.0WUSCHEL-related homeobox 9
TrEMBLA0A2H4A0990.0A0A2H4A099_PHODC; WUSCHEL-related homeobox 9
STRINGXP_008811551.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-60homeobox-3