PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s796931g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 236aa MW: 27102.9 Da PI: 8.8001

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s796931g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl PDK_30s796931g001 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	60.3	4.1e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ PDK_30s796931g001 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.723	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.99E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.22E-9	16	61	No hit	No description
PROSITE profile	PS51294	29.411	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-28	65	117	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.46E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLVNRG 120 IDPATHRPIH APPSDFIISF AEREEKDGGI LQREEEKASS SSEDSSSWQR YKRPDLNLEL 180 SISPPFQQNK SVQPIKEEMR LCLSCSLGLQ KSQECKCNGI LELRTGVLDY RAVEMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800133.1	1e-175	myb-related protein Hv1-like
Swissprot	P20026	1e-109	MYB1_HORVU; Myb-related protein Hv1
TrEMBL	A0A2H3YKI2	1e-173	A0A2H3YKI2_PHODC; myb-related protein Hv1-like
STRING	XP_008800133.1	1e-174	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	9e-97	myb domain protein 4