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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s796641g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 21049.9 Da PI: 6.0843 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135 | 2.9e-42 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+a PDK_30s796641g001 35 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVGELQA 126 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e PDK_30s796641g001 127 QLARAQAE 134 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.105 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-42 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGSSDTTTFR HHPSSSPSSS PTSSPPTPPP VVLSPCAACK ILRRRCVDKC VLAPYFPPTE 60 PLKFTTAHRV FGASNIIKLL QDLPESQRAD AVSSMVYEAN ARIRDPVYGC AGAICQLQKQ 120 VGELQAQLAR AQAELVNMQA QNANLIALIC MEMAQSQQPS TDSLIITSPY ASQNDGFFLD 180 DSSHGSLWED PLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-43 | 34 | 137 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-43 | 34 | 137 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795252.1 | 1e-143 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-75 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2H3Y960 | 1e-141 | A0A2H3Y960_PHODC; LOB domain-containing protein 1 | ||||
STRING | XP_008795252.1 | 1e-142 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-68 | LOB domain-containing protein 1 |