PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s794751g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 277aa    MW: 30887.8 Da    PI: 8.9412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s794751g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-18127181256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PDK_30s794751g001 127 RKKLRLTKEQSALLEDRFKEHSTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTK 181
                        788899***********************************************98 PP
2HD-ZIP_I/II1247.1e-40127216191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        +kk+rl+keq++lLE+ F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l
  PDK_30s794751g001 127 RKKLRLTKEQSALLEDRFKEHSTLNPKQKHALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLRDENRRLQKELQELK-AL 216
                        69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.184123183IPR001356Homeobox domain
SuperFamilySSF466893.23E-18125191IPR009057Homeodomain-like
SMARTSM003894.4E-15125187IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-17127181IPR009057Homeodomain-like
PfamPF000461.1E-15127181IPR001356Homeobox domain
CDDcd000861.71E-14127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
SMARTSM003406.9E-24183226IPR003106Leucine zipper, homeobox-associated
PfamPF021837.1E-11183217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDMNREEDVC RIGLAIGLGC GSSNDRSRRR EPCPTFSIPT PHEPSLTLSL SDDAYGASPM  60
PKAEARKASE ERRPARPSSP HSTVSSFSSA YPPSVKREKD AGGEEAEAEA ERLSSRASDE  120
EEDGSARKKL RLTKEQSALL EDRFKEHSTL NPKQKHALAK QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE FLKRCCETLR DENRRLQKEL QELKALKFAH PFYMQFPAAT LTMCPSCERI  240
GGASDGSKGG GGGGAGPFMV AQPKPRFFNP FTHSTTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790281.10.0homeobox-leucine zipper protein HAT9-like
SwissprotA2XE763e-81HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL43e-81HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2H3XXM30.0A0A2H3XXM3_PHODC; homeobox-leucine zipper protein HAT9-like
STRINGXP_008790281.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-64HD-ZIP family protein