PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32213.4 Da PI: 4.4719

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s793411g008	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ eLA+klgL+ rqV vWFqNrRa++k PDK_30s793411g008 72 KKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 125 5678*************************************************9 PP
2	HD-ZIP_I/II	134.1	4.9e-43	71	162	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++ PDK_30s793411g008 71 EKKRRLTPEQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDSLLADHDSLLKDNDRLRSQVI 162 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-20	66	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	67	127	IPR001356	Homeobox domain
SMART	SM00389	4.7E-20	70	131	IPR001356	Homeobox domain
CDD	cd00086	6.87E-20	72	128	No hit	No description
Pfam	PF00046	8.1E-18	72	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.7E-22	73	134	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-6	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-6	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.2E-18	127	169	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001558	Biological Process	regulation of cell growth
GO:0009637	Biological Process	response to blue light
GO:0009651	Biological Process	response to salt stress
GO:0009965	Biological Process	leaf morphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDSGRLIFDS PSSHHGQMLF LGGGNPIFRV LIYNGLNVID GVYDLGSDEG ARSTSPDELL 60 EEEYYDEQLP EKKRRLTPEQ VHLLERSFEA ENKLEPERKS ELARKLGLQP RQVAVWFQNR 120 RARWKTKQLE RDFDRLKSSY DSLLADHDSL LKDNDRLRSQ VISLTEKLQA KELEAAGAAA 180 GLKPDDQAAS SADHAALNVH QLKSEDRLST GSRGSAVVDG DGPPHLVDSS GESFFPESYP 240 CVGPVDGSVQ SEEDDGSDEG CNYYPDGMFA EHRHPDEEAA QLDWWVWG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00323	DAP	Transfer from AT3G01470	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781998.1	1e-170	homeobox-leucine zipper protein HOX16 isoform X1
Swissprot	Q6YWR4	2e-85	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A2H3XD95	1e-169	A0A2H3XD95_PHODC; homeobox-leucine zipper protein HOX16 isoform X1
STRING	XP_008781998.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-70	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]