PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s792411g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 359aa MW: 39705.7 Da PI: 6.1069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s792411g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.1e-05	250	289	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq PDK_30s792411g001 250 VRKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 289 57788999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.963	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.41E-5	244	293	No hit	No description
SuperFamily	SSF47459	6.67E-11	249	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-9	253	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEPSNLGHHH HQEELHASSF HDLGSHNEWS QGPMLYKKQK DVFVVCDVFI SDADGVLSSQ 60 RDYRLSHEIP PPPLDSQMVQ DLGFHWAGSA ESFMNQSAHQ LNLAKIKEEL PDSFPKLSGV 120 IREPSIEDYQ LEEKLFRTLA SDCQINSCQP RSTTDLFDAP SLADHGGGRG SLSLVFPTAN 180 ISNPCPPMQT VPISQGMDLE ALDLLASARF DRSFCQPLFS GMGLLREDTP FALGHLHEIA 240 QGPSHGHRKV RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQD QVETLSVPYL 300 RSSNNKKART TQGVSNEKRD EPKLDLRSRG LCLVPLSCTS YVTSDDGGIW SPPNYRGSA

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEPSNLGHHH HQEELHASSF HDLGSHNEWS QGPMLYKKQK DVFVVCDVFI SDADGVLSSQ  60
RDYRLSHEIP PPPLDSQMVQ DLGFHWAGSA ESFMNQSAHQ LNLAKIKEEL PDSFPKLSGV  120
IREPSIEDYQ LEEKLFRTLA SDCQINSCQP RSTTDLFDAP SLADHGGGRG SLSLVFPTAN  180
ISNPCPPMQT VPISQGMDLE ALDLLASARF DRSFCQPLFS GMGLLREDTP FALGHLHEIA  240
QGPSHGHRKV RKEKLGDRIA ALQQLVAPFG KTDTASVLME AIGYIKFLQD QVETLSVPYL  300
RSSNNKKART TQGVSNEKRD EPKLDLRSRG LCLVPLSCTS YVTSDDGGIW SPPNYRGSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784940.1	0.0	transcription factor bHLH110-like
TrEMBL	A0A2H3XJZ2	0.0	A0A2H3XJZ2_PHODC; transcription factor bHLH110-like
STRING	XP_008784940.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-40	bHLH family protein