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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s790611g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 101aa MW: 11580.4 Da PI: 10.2943 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F+ L H+r+H PDK_30s790611g006 34 HECPVCGLEFPMGQALGGHMRRH 56 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.09E-5 | 31 | 59 | No hit | No description |
Pfam | PF13912 | 2.9E-12 | 33 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MGGDKKWKKK KRTNRFRRDW VEETKKERKK PRVHECPVCG LEFPMGQALG GHMRRHKPTE 60 ADEACTGKKA GAGKKMEEEE KNKQACAGVE RLGCSEVLLF H |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920697.2 | 1e-33 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A2H3YAC2 | 3e-21 | A0A2H3YAC2_PHODC; zinc finger protein ZAT11-like | ||||
STRING | XP_008794835.1 | 1e-36 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-12 | C2H2 family protein |