PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s789261g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | SBP | ||||||||
Protein Properties | Length: 223aa MW: 23600.2 Da PI: 8.5731 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 70.3 | 3.8e-22 | 176 | 223 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC++dls ak yhr+h+vCe+hsk+p v+v+g+e+rfCqqCsr PDK_30s789261g001 176 CCQVEGCNVDLSGAKYYHRKHRVCETHSKSPRVIVAGQERRFCQQCSR 223 6**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-22 | 169 | 223 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.435 | 174 | 223 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.32E-21 | 175 | 223 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-17 | 177 | 223 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEWNTKTSSL WEWDNLALFS GNSKQEQQTD WKIEVKGAGV IENGSLYSSG GGGGSGGGAC 60 SGSDLGNGSS SKSSISASID SSSKAGVKIS EFNFEAVNKD SMRVPDGGLS AAVVTAARSQ 120 EALIGLKLGK RTYFEDVCAG SNFNNPPSSS SSVSVVLPAS LVKKPRVTQQ TVQSTCCQVE 180 GCNVDLSGAK YYHRKHRVCE THSKSPRVIV AGQERRFCQQ CSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 2e-15 | 174 | 223 | 3 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789607.1 | 1e-160 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_008789608.1 | 1e-160 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | A2X0Q6 | 6e-49 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 6e-49 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A2H3XW15 | 1e-159 | A0A2H3XW15_PHODC; squamosa promoter-binding-like protein 3 | ||||
STRING | XP_008789607.1 | 1e-159 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 5e-22 | squamosa promoter binding protein-like 2 |