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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PDK_30s787831g004 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family |
NAC |
| Protein Properties |
Length: 343aa MW: 38960.5 Da PI: 5.1865 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s787831g004 | genome | PDK | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 108.6 | 7.1e-34 | 10 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....s 80
lp+G++F+P+d+el+++ L+k +g+ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ +
PDK_30s787831g004 10 LPRGVKFDPSDQELLWHLLAKVGKGDAkphpfINEFIPtVEEDdGICYTHPQKLP-GVKQDGSMSHFFHRTFKAYTTGTRKRRKINsddlgD 100
799************877776655555666543332222444435**********.677888899******************865555558 PP
NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+W++tgk+k+v+ +g++ g+kk++v+y + + +k+ekt+Wvmh+y+l
PDK_30s787831g004 101 VRWHKTGKTKPVII-DGKHLGCKKIMVLYvsSVKGEKSEKTNWVMHQYHL 149
89************.999***********8756888889*********98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000077 | Biological Process | DNA damage checkpoint |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010332 | Biological Process | response to gamma radiation |
| GO:0040020 | Biological Process | regulation of meiotic nuclear division |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MEVVQEWPGL PRGVKFDPSD QELLWHLLAK VGKGDAKPHP FINEFIPTVE EDDGICYTHP 60
QKLPGVKQDG SMSHFFHRTF KAYTTGTRKR RKINSDDLGD VRWHKTGKTK PVIIDGKHLG 120
CKKIMVLYVS SVKGEKSEKT NWVMHQYHLG TGEDEKDGEY VVSKIFYQQS KPGDKNGLDP 180
TLEIMKTVVA DVDLVADPES VSSECHVGKQ DLVHSPEQTS DQVKMYHENR VEEHNAQLEC 240
EKFNDQDNHP TEDTKWWEGE SQFLLDSQQL AEGIAICDEF LQSQSSCGGD EAKKSRPRLS 300
DYAHMGVEDL KKDLEACQNL SNNDHTNIEL DTPPDFRLSQ LVI
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
| Publications
? help Back to Top |
- Yi D, et al.
The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species.
Plant Cell, 2014. 26(1): p. 296-309
[PMID:24399300] - Biever JJ,Brinkman D,Gardner G
UV-B inhibition of hypocotyl growth in etiolated Arabidopsis thaliana seedlings is a consequence of cell cycle arrest initiated by photodimer accumulation.
J. Exp. Bot., 2014. 65(11): p. 2949-61
[PMID:24591052] - Hu Z,Cools T,Kalhorzadeh P,Heyman J,De Veylder L
Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links.
Plant Cell, 2015. 27(1): p. 149-61
[PMID:25595823] - Chen P,Umeda M
DNA double-strand breaks induce the expression of flavin-containing monooxygenase and reduce root meristem size in Arabidopsis thaliana.
Genes Cells, 2015. 20(8): p. 636-46
[PMID:26033196] - Sjogren CA,Bolaris SC,Larsen PB
Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response.
Plant Cell, 2015. 27(9): p. 2501-15
[PMID:26320227] - Yoshiyama KO
SOG1: a master regulator of the DNA damage response in plants.
Genes Genet. Syst., 2016. 90(4): p. 209-16
[PMID:26617076] - Weimer AK, et al.
The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.
EMBO J., 2016. 35(19): p. 2068-2086
[PMID:27497297] - Davis OM,Ogita N,Inagaki S,Takahashi N,Umeda M
DNA damage inhibits lateral root formation by up-regulating cytokinin biosynthesis genes in Arabidopsis thaliana.
Genes Cells, 2016. 21(11): p. 1195-1208
[PMID:27658920] - Pedroza-García JA, et al.
Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis.
Plant Physiol., 2017. 173(3): p. 1735-1749
[PMID:28153919] - Horvath BM, et al.
Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control.
EMBO J., 2017. 36(9): p. 1261-1278
[PMID:28320736] - Sjogren CA,Larsen PB
SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis.
Plant Cell Environ., 2017. 40(9): p. 1849-1860
[PMID:28556304] - Yoshiyama KO,Kaminoyama K,Sakamoto T,Kimura S
Increased Phosphorylation of Ser-Gln Sites on SUPPRESSOR OF GAMMA RESPONSE1 Strengthens the DNA Damage Response in Arabidopsis thaliana.
Plant Cell, 2017. 29(12): p. 3255-3268
[PMID:29208704] - Johnson RA, et al.
SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration.
Plant Physiol., 2018. 176(2): p. 1665-1675
[PMID:29222192] - Ogita N, et al.
Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis.
Plant J., 2018. 94(3): p. 439-453
[PMID:29430765] - Cao X, et al.
Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots.
Chemosphere, 2018. 201: p. 586-594
[PMID:29533809]
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