PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s787431g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 262aa MW: 30525.3 Da PI: 4.6649

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s787431g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.5e-19	40	92	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t++q++ Le+ Fe ++++ e++ +LA+ lgL+ rqV +WFqNrRa++k PDK_30s787431g001 40 KRRLTADQVQFLERTFELENKLEPETKVQLARDLGLKPRQVAIWFQNRRARWK 92 5689************************************************9 PP
2	HD-ZIP_I/II	130.1	8.9e-42	39	128	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+++qv++LE++Fe e+kLepe Kv+lar+Lgl+prqva+WFqnrRAR+ktkqlEkdyeaLk++ydal+++ + L ke+e+Lr+e+ PDK_30s787431g001 39 KKRRLTADQVQFLERTFELENKLEPETKVQLARDLGLKPRQVAIWFQNRRARWKTKQLEKDYEALKSRYDALTADYDILLKEKEKLRTEV 128 9**************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.85E-19	29	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	34	94	IPR001356	Homeobox domain
SMART	SM00389	9.6E-18	36	98	IPR001356	Homeobox domain
CDD	cd00086	3.84E-16	39	95	No hit	No description
Pfam	PF00046	1.4E-16	39	92	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.1E-20	41	101	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-5	65	74	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	74	90	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.4E-17	94	135	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MMNYEDVLGN RLEQPFWRPF ELEETGDEDL DEGVHQPVKK RRLTADQVQF LERTFELENK 60 LEPETKVQLA RDLGLKPRQV AIWFQNRRAR WKTKQLEKDY EALKSRYDAL TADYDILLKE 120 KEKLRTEVLS LTNMLLLKEK DIGSSEPFES NKFAHQLENL GSDSLCEMKR VNAQVTVCKQ 180 EDLSSANSTV LDSESPHYYI REGAHSTLMV PVDSSNIFQP DRSDLLHAGE VGEVKGCNFL 240 RLEDSLNNYG FPVEDQSYWF WP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	94	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786730.2	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A2H3XP59	0.0	A0A2H3XP59_PHODC; homeobox-leucine zipper protein HAT5-like
STRING	XP_008786730.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16055	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-43	homeobox 1