PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s785711g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 529aa    MW: 56836 Da    PI: 9.9376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s785711g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19337386255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +grW+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  PDK_30s785711g009 337 RYRGVRQRP-WGRWAAEIRDP-----HkaARVWLGTFHTAEAAARAYDEAALRFRG 386
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.2E-35337400IPR001471AP2/ERF domain
PROSITE profilePS5103225.435337394IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21337395IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-32337395IPR001471AP2/ERF domain
PfamPF008474.3E-13337386IPR001471AP2/ERF domain
PRINTSPR003671.2E-10338349IPR001471AP2/ERF domain
CDDcd000181.83E-13345396No hitNo description
PRINTSPR003671.2E-10360376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MALLPIKWFR VRYAQASIKL WRPDAPCSDT GSRRAYRSTG SLGGARCDVF TRGIRAGAQR  60
GNQAGPTDGE DMSKIGWGAQ HMIISVHIEH SPEKHDKLRS LQGQKSPMGR TAPASAQRRS  120
QSGLKLSSRR HSLSSSSGTD SLARHSTPFK YSKASLEELV RMSLMCFELA NASGGSSAPA  180
RHDDVEEDGA VARMSSTRTG RRRQAQETPT MIPASTRIVS GERVPGGLAW EVVPAGCLGS  240
VGSPSSSSSS HSWGGQGGGG GCGQKRTREV LPPELVMRYH HGYGQFDSYH RGEASPNVVA  300
TEHSKQSPQT SIQAPAMEES SPSSYPEAAR EAAPRRRYRG VRQRPWGRWA AEIRDPHKAA  360
RVWLGTFHTA EAAARAYDEA ALRFRGSRAK LNFPEDARLP STPPSAAPAN SNSPATLSSD  420
ASRDYLEYSW LLQGLGEYRT LPPTSLSDRS MYSNYPWAVA STTMDGSLAS GSLQTSSSVF  480
ASASPPPPPP PRFYTSEATA SENFVGDGGS ALLTPYSADS SQLPPPTSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21336394463ATERF1
3gcc_A1e-21336394463ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793923.10.0ethylene-responsive transcription factor ERF115-like isoform X1
RefseqXP_026661617.10.0ethylene-responsive transcription factor ERF115-like isoform X1
TrEMBLA0A2H3Y5Z40.0A0A2H3Y5Z4_PHODC; ethylene-responsive transcription factor ERF115-like isoform X1
STRINGXP_008793923.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2495935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-25ethylene response factor 110