PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s785711g009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 529aa MW: 56836 Da PI: 9.9376 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 337 | 386 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrdp + +r++lg+f tae Aa+a+++a+++++g PDK_30s785711g009 337 RYRGVRQRP-WGRWAAEIRDP-----HkaARVWLGTFHTAEAAARAYDEAALRFRG 386 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.2E-35 | 337 | 400 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.435 | 337 | 394 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 337 | 395 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 337 | 395 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-13 | 337 | 386 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 338 | 349 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-13 | 345 | 396 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 360 | 376 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MALLPIKWFR VRYAQASIKL WRPDAPCSDT GSRRAYRSTG SLGGARCDVF TRGIRAGAQR 60 GNQAGPTDGE DMSKIGWGAQ HMIISVHIEH SPEKHDKLRS LQGQKSPMGR TAPASAQRRS 120 QSGLKLSSRR HSLSSSSGTD SLARHSTPFK YSKASLEELV RMSLMCFELA NASGGSSAPA 180 RHDDVEEDGA VARMSSTRTG RRRQAQETPT MIPASTRIVS GERVPGGLAW EVVPAGCLGS 240 VGSPSSSSSS HSWGGQGGGG GCGQKRTREV LPPELVMRYH HGYGQFDSYH RGEASPNVVA 300 TEHSKQSPQT SIQAPAMEES SPSSYPEAAR EAAPRRRYRG VRQRPWGRWA AEIRDPHKAA 360 RVWLGTFHTA EAAARAYDEA ALRFRGSRAK LNFPEDARLP STPPSAAPAN SNSPATLSSD 420 ASRDYLEYSW LLQGLGEYRT LPPTSLSDRS MYSNYPWAVA STTMDGSLAS GSLQTSSSVF 480 ASASPPPPPP PRFYTSEATA SENFVGDGGS ALLTPYSADS SQLPPPTSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 336 | 394 | 4 | 63 | ATERF1 |
3gcc_A | 1e-21 | 336 | 394 | 4 | 63 | ATERF1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793923.1 | 0.0 | ethylene-responsive transcription factor ERF115-like isoform X1 | ||||
Refseq | XP_026661617.1 | 0.0 | ethylene-responsive transcription factor ERF115-like isoform X1 | ||||
TrEMBL | A0A2H3Y5Z4 | 0.0 | A0A2H3Y5Z4_PHODC; ethylene-responsive transcription factor ERF115-like isoform X1 | ||||
STRING | XP_008793923.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24959 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-25 | ethylene response factor 110 |