PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s779311g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 577aa MW: 66709.6 Da PI: 5.5374

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s779311g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.5e-24	72	158	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg +++e + +++ +++ trtgCka+++ + ++dg+w+vtkl+ eHnH+la PDK_30s779311g005 72 LYRDYGHRMGFSVRKGKQYYWIGTKKIRTKDYYCSKEGLKNDEFLD--ESNYNKPDTRTGCKAMIRFTVDEDGQWKVTKLVDEHNHDLA 158 7**************************************99888..8999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-21	72	158	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.262	411	447	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-6	412	444	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-5	422	449	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MDSSEYGDSS CGGSHREAIC LDNGGEGEVI RANSNGKEAD KHEESSDVLR HEEVTKELLG 60 QVVHSEEEAY SLYRDYGHRM GFSVRKGKQY YWIGTKKIRT KDYYCSKEGL KNDEFLDESN 120 YNKPDTRTGC KAMIRFTVDE DGQWKVTKLV DEHNHDLAKP EERHLLRSMR SLIAAKASVL 180 DSMVNAGIRM VNTYSYMVEE SSSAENLEFT KQNCDDYINK HKLMLIDAKD SQSLVRHFKH 240 RANQEGCDSE EEFEETWGKM ISEFDAQENK WLHNLYKFRH KWCTALNKDT FDGGIKSSQR 300 GDLTNNVLNG LADKSTSLTK FVVALEKLVN GWRRNESEED FRCNQGAPTC TVEHSGIFKQ 360 CSKMFTHKIY KLIEEEYLDE CGATSLSQEI SLGATLYKFE LMMHGRGSKV WTVLLDTSTM 420 EVSCSCRKFE RMGLLCSHVL KAFSIKNVQR IPEQYILKRW TKDARKRVYR LNEEGSSKKK 480 WTVELIYHNQ AMRYAYNLVM KSQGHEGARK ILWDTFDMGD AKLEKFFDKL SLDAHSAVQT 540 NDYDEAEMVD DDDDDDEEEE EEYPVLDPPH LRFNGQI

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MDSSEYGDSS CGGSHREAIC LDNGGEGEVI RANSNGKEAD KHEESSDVLR HEEVTKELLG  60
QVVHSEEEAY SLYRDYGHRM GFSVRKGKQY YWIGTKKIRT KDYYCSKEGL KNDEFLDESN  120
YNKPDTRTGC KAMIRFTVDE DGQWKVTKLV DEHNHDLAKP EERHLLRSMR SLIAAKASVL  180
DSMVNAGIRM VNTYSYMVEE SSSAENLEFT KQNCDDYINK HKLMLIDAKD SQSLVRHFKH  240
RANQEGCDSE EEFEETWGKM ISEFDAQENK WLHNLYKFRH KWCTALNKDT FDGGIKSSQR  300
GDLTNNVLNG LADKSTSLTK FVVALEKLVN GWRRNESEED FRCNQGAPTC TVEHSGIFKQ  360
CSKMFTHKIY KLIEEEYLDE CGATSLSQEI SLGATLYKFE LMMHGRGSKV WTVLLDTSTM  420
EVSCSCRKFE RMGLLCSHVL KAFSIKNVQR IPEQYILKRW TKDARKRVYR LNEEGSSKKK  480
WTVELIYHNQ AMRYAYNLVM KSQGHEGARK ILWDTFDMGD AKLEKFFDKL SLDAHSAVQT  540
NDYDEAEMVD DDDDDDEEEE EEYPVLDPPH LRFNGQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781698.2	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3XCK0	0.0	A0A2H3XCK0_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008781698.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-30	FAR1-related sequence 5