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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PDK_30s779001g001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family |
M-type_MADS |
Protein Properties |
Length: 139aa MW: 16181 Da PI: 10.4724 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PDK_30s779001g001 | genome | PDK | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 76 | 123 | 4 | 51 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
enk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs+ gklye++s
PDK_30s779001g001 76 ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNCGKLYEFCS 123
8*********************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 139 aa
Download sequence Send
to blast |
MSNERPSLQL KGSFLSKIKT AITFDYWWRL SHFFLILPLF EDHDVRGLGI RKNLCPKLSQ 60 RLPSSFEREK RTGERENKIN RQVTFAKRRN GLLKKAYELS VLCDAEVALI IFSNCGKLYE 120 FCSSSRSQGK GMLLLRFLC
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1c7u_A | 3e-15 | 80 | 125 | 15 | 60 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 3e-15 | 80 | 125 | 15 | 60 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF411845 | 2e-64 | AF411845.1 Elaeis guineensis MADS box transcription factor (AGL2-3) mRNA, complete cds. |