PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s778521g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HB-other | ||||||||
Protein Properties | Length: 135aa MW: 15943.9 Da PI: 7.6786 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.2 | 2.7e-08 | 81 | 114 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + PDK_30s778521g002 81 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 114 469*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.774 | 55 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-11 | 57 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-16 | 57 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.76E-11 | 58 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-26 | 62 | 121 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-18 | 75 | 114 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSDDEDELQQ GCPLDMTVDH EHDMMGFGPL LPTESERSLM DRGFRSRIED VREEILRKRR 60 AGKLPGDTTS VLKQWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS 120 QSATTLKSKR RSLYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 5e-14 | 58 | 123 | 8 | 73 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017697186.1 | 2e-90 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q9FPQ8 | 4e-70 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A2H3ZM19 | 4e-89 | A0A2H3ZM19_PHODC; homeobox protein knotted-1-like 3 | ||||
STRING | XP_008783524.1 | 1e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 2e-72 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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