PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s778141g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 351aa    MW: 39360.3 Da    PI: 8.5532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s778141g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.6e-50161412128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + 
  PDK_30s778141g001  16 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIR 106
                        79***************************.89***************8778899************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  PDK_30s778141g001 107 AENHRSIGLKKTLVFYTGKAPKGIRTSWIMNEYRL 141
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.58815162IPR003441NAC domain
SuperFamilySSF1019412.09E-5615161IPR003441NAC domain
PfamPF023655.4E-2517141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSADDGRDAH EDDLVMPGFR FHPTEEELIE FYLRRKVEGK RFNVELITFL DLYRYDPWEL  60
PALAAIGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRAENH RSIGLKKTLV  120
FYTGKAPKGI RTSWIMNEYR LPHSETDRHQ KAEISLCRVY KRAGVDDRCQ LPGTLSSKAS  180
SSRGTGPDKK HGSSHQPPPS FQTFAGDSSS SVMEKAPKIG GEGSTHLSAP VLQKPALYRS  240
TASVASLGST TSTEEDGTSL HYPKNTTALI STCSVLTPAT SCMASPTIDE LHSLVGYNQN  300
YLNQPYQSLP SQLQPQLLPL NALPVSFPTI SDKLWEWNPL HEVGRDFASF K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-551716222168NAC domain-containing protein 19
3swm_B4e-551716222168NAC domain-containing protein 19
3swm_C4e-551716222168NAC domain-containing protein 19
3swm_D4e-551716222168NAC domain-containing protein 19
3swp_A4e-551716222168NAC domain-containing protein 19
3swp_B4e-551716222168NAC domain-containing protein 19
3swp_C4e-551716222168NAC domain-containing protein 19
3swp_D4e-551716222168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804076.10.0NAC domain-containing protein 35-like isoform X1
RefseqXP_026664392.10.0NAC domain-containing protein 35-like isoform X1
TrEMBLA0A2H3YUM20.0A0A2H3YUM2_PHODC; NAC domain-containing protein 35-like isoform X1
STRINGXP_008804076.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-106NAC domain containing protein 35