PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s777521g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 149aa MW: 16774.7 Da PI: 7.5052 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 28 | 48 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++C ++F ++ L H++ PDK_30s777521g004 28 FSCNYCERMFYSSQALGGHQN 48 89***********99988886 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H PDK_30s777521g004 55 FSCHYCQRKFCTSQALGGHQNAH 77 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.8E-6 | 26 | 77 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MELEPKNQEL NLDLGLEPSR LPEPARVFSC NYCERMFYSS QALGGHQNAE PARVFSCHYC 60 QRKFCTSQAL GGHQNAHKLE RSLTKRKRDL GLAARQHASS SHWEVPRSGS AGLERREEGA 120 AMAATRAASY DERDSKEELA QEIDLSLRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789729.1 | 8e-69 | zinc finger protein 2-like | ||||
TrEMBL | A0A2H3XWB9 | 2e-67 | A0A2H3XWB9_PHODC; zinc finger protein 2-like | ||||
STRING | XP_008789729.1 | 3e-68 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 8e-17 | zinc finger protein 2 |