PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s775431g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21470 Da PI: 4.6582 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H PDK_30s775431g003 65 YACSFCRREFRSAQALGGHMNVH 87 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-6 | 62 | 91 | No hit | No description |
Pfam | PF13912 | 1.3E-5 | 65 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.177 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MAAELSLPSM NQLQKLAQQQ QQQLNPSIWN WPGRRPAEDD DSWEVRAFAE DTSSAMGTTW 60 PPRSYACSFC RREFRSAQAL GGHMNVHRRD RARLRQSPQG SDDPAPTETP SPPIIFPPPI 120 PEFVANGGYC LLYPIPNTGT VFAPTGDSPS TLLSIAPYPG GGLVSPSPPT LDSWVGKDGG 180 KDGAVVEELD LELRLGW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-13 | 60 | 87 | 2 | 29 | superman protein |
2l1o_A | 5e-13 | 60 | 87 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019709269.1 | 2e-94 | zinc finger protein KNUCKLES-like | ||||
TrEMBL | A0A2H3YBV8 | 4e-75 | A0A2H3YBV8_PHODC; transcriptional regulator SUPERMAN-like | ||||
STRING | XP_008796324.1 | 7e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-30 | C2H2 family protein |