PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s774131g011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27546.3 Da PI: 8.0381 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 54 | 112 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr++l ++ + + +Ka+ L kAve +++L PDK_30s774131g011 54 RNHREAEKRRRERIKSHLDRLRTILACDPkllylllFFFKVRTDKASLLAKAVERVRDL 112 78*************************777999999778889************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-10 | 47 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.402 | 51 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-7 | 54 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-11 | 55 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-7 | 57 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.8E-4 | 150 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MYRSLSVSRD GGNPGGSGAA VAMPGYFMGS FYPMEMGSGS GGDASMDRAL IASRNHREAE 60 KRRRERIKSH LDRLRTILAC DPKLLYLLLF FFKVRTDKAS LLAKAVERVR DLKQQTAEIT 120 ENQLFPTEND EIVVLPSSSS NGQGSVFEAS LCCEDRSDLL PELIETLRSL RLKTLRAEIA 180 TLGGRVRNVL VVAREKEEYD EEEAEDGEGS GGAFLRDALK ALVDQPVSDD RSKRRRKSVI 240 DAKYLRVG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786854.1 | 1e-132 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 2e-51 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A2H3XPJ6 | 1e-130 | A0A2H3XPJ6_PHODC; transcription factor bHLH106-like | ||||
STRING | XP_008786854.1 | 1e-131 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 3e-42 | bHLH family protein |
Publications ? help Back to Top | |||
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