PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PDK_30s771701g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WOX

Protein Properties

Length: 210aa MW: 22817.4 Da PI: 4.6273

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s771701g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.3	1.2e-13	30	85	2	52
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrR 52 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR PDK_30s771701g001 30 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRR 85 89***************99********************************9 PP
2	Wus_type_Homeobox	95.6	4.2e-31	29	85	2	58
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrk 58 r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr+ PDK_30s771701g001 29 MRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRR 85 589*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-7	8	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.1E-10	26	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.973	26	85	IPR001356	Homeobox domain
SMART	SM00389	0.0061	28	95	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-11	30	85	IPR001356	Homeobox domain
CDD	cd00086	9.06E-6	30	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MDDHSAGNNS SSSSPGGGST ANRTATEPMR SRWTPKPEQI LILESIFNSG MVNPPKDETV 60 RIRKLLEKFG AVGDANVFYW FQNRRGGFFP ACSSSASSSS SSSSSFMQDD GADDLFSISR 120 QMGFTDNTQT PFMYSSDVTQ LHYQPGSITV FINGVPSEVP RGSMDLRAMF GQDVMLVHAS 180 GEVLPVNEYG ILMQSLQMGE SYFLVSCSAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017698943.1	1e-116	WUSCHEL-related homeobox 6-like
Swissprot	Q6X7J3	7e-61	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A2H3ZS24	1e-115	A0A2H3ZS24_PHODC; WUSCHEL-related homeobox 6-like
STRING	XP_008793338.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	4e-36	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]