PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s763631g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 379aa MW: 43879.3 Da PI: 6.6513

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s763631g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.9	8.5e-26	57	154	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+ +v++Li+a+++++e+ ++ +kk++W+++sk+m+erg+ +sp+qC++k+++lnkryk+++++ +++ +++++++ + PDK_30s763631g002 57 KWTRAMVRLLITAVSYIGEDAMSEYnsggrrkytllQKKGKWKAISKVMAERGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPV 148 7************998887764234566778888******************************************669*** PP trihelix 81 yfdqle 86 ++dq++ PDK_30s763631g002 149 LLDQMD 154 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-22	55	179	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MQDCNQQPAV PVTDYNKGEH GKASLSDDDD QNFTEDGVDG QNEAGNGKKG FPWQRMKWTR 60 AMVRLLITAV SYIGEDAMSE YNSGGRRKYT LLQKKGKWKA ISKVMAERGC YVSPQQCEDK 120 FNDLNKRYKR LTDILGRGTS CKVVENPVLL DQMDISDKLK EDARKILSSK HLFYEEMCSY 180 HNGNRLNLPH DPALHRSLQL VLRSREEHDI RRAVHEDIDE DDQSADTDNE EDDAEEHTVL 240 HGDIGGSCIP KRIKHLVDHE EVGFGNPSGS QDCTRRLHPQ GMSVDMNQVL PEGSTVAWGQ 300 NNTMSSRSLQ LEDQRLNIQL QMLELERQRF KWQRFSKKKD RELNKMRMEN GRMKLENERL 360 ALELKRKEFE IDLNMKRNQ

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MQDCNQQPAV PVTDYNKGEH GKASLSDDDD QNFTEDGVDG QNEAGNGKKG FPWQRMKWTR  60
AMVRLLITAV SYIGEDAMSE YNSGGRRKYT LLQKKGKWKA ISKVMAERGC YVSPQQCEDK  120
FNDLNKRYKR LTDILGRGTS CKVVENPVLL DQMDISDKLK EDARKILSSK HLFYEEMCSY  180
HNGNRLNLPH DPALHRSLQL VLRSREEHDI RRAVHEDIDE DDQSADTDNE EDDAEEHTVL  240
HGDIGGSCIP KRIKHLVDHE EVGFGNPSGS QDCTRRLHPQ GMSVDMNQVL PEGSTVAWGQ  300
NNTMSSRSLQ LEDQRLNIQL QMLELERQRF KWQRFSKKKD RELNKMRMEN GRMKLENERL  360
ALELKRKEFE IDLNMKRNQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781414.1	0.0	uncharacterized protein LOC103701210 isoform X2
TrEMBL	A0A2H3XBP6	0.0	A0A2H3XBP6_PHODC; uncharacterized protein LOC103701210 isoform X2
STRING	XP_008781412.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-125	sequence-specific DNA binding transcription factors