PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s762951g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 28786.6 Da PI: 9.4822 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.6 | 7.5e-34 | 12 | 85 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ewyfFs+rd+ky++g+r+nrat+ gyWkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl PDK_30s762951g001 12 NDLEWYFFSPRDRKYPNGSRTNRATQGGYWKATGKDRKVSS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 85 5669************************************9.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.071 | 1 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.41E-36 | 10 | 91 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-17 | 16 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MIISEKSFLP SNDLEWYFFS PRDRKYPNGS RTNRATQGGY WKATGKDRKV SSQRRAVGMK 60 KTLVYYRGRA PHGSRTDWVM HEYRLDEKEC ETAFGLQNEG QQEKRFYVVE WTVSEDDSAL 120 ENIETVRQLF RVALLPADRA KIQAMSLNQF LESTRLSAVR HLHEIETLIS IGADYKGRAH 180 RSLRAQEEAE KKAAELELQK KELLLRLGAT EDEIQIVAAE LKEEKLDQSC GPPRLAWPRR 240 GPCSSPASRK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-31 | 15 | 87 | 72 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-31 | 15 | 87 | 72 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-31 | 15 | 87 | 72 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-31 | 15 | 87 | 72 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swm_B | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swm_C | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swm_D | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swp_A | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swp_B | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swp_C | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
3swp_D | 7e-31 | 15 | 87 | 75 | 147 | NAC domain-containing protein 19 |
4dul_A | 8e-31 | 15 | 87 | 72 | 144 | NAC domain-containing protein 19 |
4dul_B | 8e-31 | 15 | 87 | 72 | 144 | NAC domain-containing protein 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G17730.1 | 5e-52 | NAC domain containing protein 57 |