PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s762461g016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17457.5 Da PI: 5.7024 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 15 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +g+Wv+eIr+p g + r +lg++ t+e Aa a++ a l+g PDK_30s762461g016 15 KYKGVRRRK-WGKWVSEIRVP---G-SHRLWLGSYATPEAAAVAHDTAVFFLRG 63 8*****998.**********8...3.6**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-24 | 14 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-10 | 15 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-21 | 15 | 74 | No hit | No description |
SMART | SM00380 | 2.5E-23 | 15 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-17 | 15 | 74 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.167 | 15 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-8 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSRTQEGAAT AGERKYKGVR RRKWGKWVSE IRVPGSHRLW LGSYATPEAA AVAHDTAVFF 60 LRGPDWSQGL NFPDRVATYP WTGLSPTSIQ RVASDSGMAV DAQLAVRVPQ AQMQPPAQRA 120 EVGAMEDVNG REGGEHGYLY EGSELGGDIC NEDMDIIYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 22 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807007.1 | 1e-113 | ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | O80542 | 7e-31 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | A0A2H3Z1I0 | 1e-112 | A0A2H3Z1I0_PHODC; ethylene-responsive transcription factor ERF020-like | ||||
STRING | XP_008807007.1 | 1e-113 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6433 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 2e-33 | ERF family protein |
Publications ? help Back to Top | |||
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