PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s762151g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 967aa    MW: 106718 Da    PI: 8.0877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s762151g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022851874122
                        EEET..TTTEEESSHHHHHHHHHH CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                        y+C    C++sFs+k +L  H r 
  PDK_30s762151g003 851 YVCDieGCSMSFSTKQDLSLHKRD 874
                        99*******************985 PP
2zf-C2H213.10.00029876898323
                        ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                        Cp   Cgk F ++ +L++H ++H
  PDK_30s762151g003 876 CPvkGCGKKFFSHKYLVQHRKVH 898
                        9999*****************99 PP
3zf-C2H212.50.00046934960123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                        y+C    Cg++F+  s++ rH r+  H
  PDK_30s762151g003 934 YVCRepGCGQTFRFVSDFSRHKRKtgH 960
                        899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-4850873IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.5851873IPR015880Zinc finger, C2H2-like
SMARTSM003550.49874898IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967874903IPR007087Zinc finger, C2H2
SuperFamilySSF576677.17E-6875910No hitNo description
PROSITE patternPS000280876898IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-5876902IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.9E-8903928IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0029904928IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.157904933IPR007087Zinc finger, C2H2
PROSITE patternPS000280906928IPR007087Zinc finger, C2H2
SuperFamilySSF576676.72E-10914958No hitNo description
Gene3DG3DSA:3.30.160.605.9E-10929957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.679934965IPR007087Zinc finger, C2H2
SMARTSM003550.25934960IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280936960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 967 aa     Download sequence    Send to blast
MPRGSRSEPR SSRLKDKMKG DGEEMVKNIF VQNVIQNNHL LSFLLDKGSS CIVLPQNAPD  60
SPLCSNSLVR LKAKPRLSVG LCSHEEAMEA SRLLPSDDIT PGWNAGIRNM SGLCSLKGNS  120
VSVWQGKMIS SATCSKFGTA DFYSSSSDSQ NVEGEKEGTL QGDGLLDQGL LSCVTCGILS  180
FACVAVIQPR EAAAKYLMSA DCGILSGHIN GSGEVSGINK DTSRKIDGSN LVSGSGQIGR  240
HTEDAGDDYW VHCSTYSGQV SEQSFEVFSD NTGQRGISAL DLLASAYGDT SDTEEEVLHE  300
KSACTDKNDT KGSPSSCKPI EHPNFGVELQ KLCSSKDSQK EIDLSLVGAD CQNRTFAQNS  360
HNDGGSDDPS SLTNVSAGEK CQLKLEFCGS NESENAKSAG TDSLDDNRKI TTSNSSIKSM  420
EEPMDFSYRE VEDGCHATET ADNHENNMKM GNPSFGSEDH TIQPDFCCDL SESTKRTAIT  480
TQSINVDTGM MNSGIPAMRR CDKDSSRMHV FCLEHAVEVE KQIQPAGGID IMLFCHPDYP  540
KIEAEAKLLA EELGIHYTWK DVHFKEATEE EQERFRAALE DEEAIPVNSD WAVKLGINLY  600
YSASLSKSPL YSKQMPYNSV IYKAFGCNSP GNSPVKPKTS GRRAGRQKKI VVAGRWCGKV  660
WMSNQVHPYL AHRNEAQEHD HVEQLYSQGI GQKPKVKTHT KDAPSERNPP ASDGTSARKS  720
GKKRKKPLRK ASKKKPRRAQ IDKSEATDDV PETSSSPYKS EATDDVAETS SSPCGRVLRS  780
SHSKHAEIAN RKKFNRKDEA EGGPSTRLRK RTSKATEEVK TKSASRKQVR QRKAKKAQVT  840
NLVTKDEDGE YVCDIEGCSM SFSTKQDLSL HKRDICPVKG CGKKFFSHKY LVQHRKVHMD  900
DRPLECPWKG CKMTFKWAWA RTEHIRVHTG DRPYVCREPG CGQTFRFVSD FSRHKRKTGH  960
SIKKGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-6585196423136Lysine-specific demethylase REF6
6a58_A4e-6585196423136Lysine-specific demethylase REF6
6a59_A4e-6585196423136Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721725KKRKK
2721735KKRKKPLRKASKKKP
3724734KKPLRKASKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799926.10.0lysine-specific demethylase REF6-like isoform X1
TrEMBLA0A2H3YKE00.0A0A2H3YKE0_PHODC; lysine-specific demethylase REF6-like isoform X1
STRINGXP_008799926.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-63relative of early flowering 6