PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s760301g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 499aa    MW: 54136.5 Da    PI: 7.1046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s760301g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09320368355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  PDK_30s760301g004 320 NSHSLAERVRREKISERMKYLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 368
                        58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.99E-10315372No hitNo description
SuperFamilySSF474597.98E-17315386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.491317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16318385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6320368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-10323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEMDANDRFG MEKRSGDHLN HQTSGISVNW QFGTPSMGAV PANPPIAMCR QGASKTSSSS  60
CPSVTVVDSF PPGLWSHPAN PQNSGFSDVQ TTMSASSSIP IGKPVAVSSR EMFLPAVPGI  120
LLPSLSLFPA DSDFIERAAR FSCFNGGNFS DITDAFGPSE SLTPRSNAPG GVAGAQVQKS  180
ELHLTEVPRT IDGGSISGSP SNNQRVKGGS LVGGLGNESW EANFSEDDRE KSPELANKAA  240
NSSSSDLGAK KRKRTNQDME LDQLQRGPQL SIENTKDSTE TKQKVEKTSS KPTGKQVKDH  300
TEGSKEDYIH VRARRGQATN SHSLAERVRR EKISERMKYL QELVPGCSKV TGKAVMLDEI  360
INYVQSLQRQ VEFLSMKLAN VNPRLDFNME GLLSKDFFQS CGSSSSMIGF SPDTIPPQLH  420
PSQHSLVQFG ISGMGNPSDA TRRAMNAQLT AMNGFKEPTP QMPNVWDDEL HNVMQLSYTT  480
NPPLHSKESN SKPRDGFPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KKRKRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783047.10.0transcription factor bHLH49
TrEMBLA0A2H3XFL40.0A0A2H3XFL4_PHODC; transcription factor bHLH49
STRINGXP_008783047.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-80bHLH family protein