PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s759331g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 580aa    MW: 65893.5 Da    PI: 6.5736
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s759331g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.3e-40101091100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rr+C++dC+lapyfp +qpk+f+n+h+lFG+sn+lk+l++l++ ++ +am+s++yeA++r r Pv+G++g+i++l+ q+++ + 
  PDK_30s759331g002  10 ACAACKYQRRRCSADCPLAPYFPPDQPKQFQNAHRLFGVSNILKILNNLEPPQKAEAMRSIIYEANVRDRHPVHGCLGLIFNLHLQIQHIQL 101
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        el++++++
  PDK_30s759331g002 102 ELDAINAQ 109
                        **998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.0969110IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-3910106IPR004883Lateral organ boundaries, LOB
SuperFamilySSF530985.88E-14450537IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.109.3E-11451538IPR012337Ribonuclease H-like domain
PROSITE profilePS5099411.762455557IPR001584Integrase, catalytic core
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAAKGGTRQA CAACKYQRRR CSADCPLAPY FPPDQPKQFQ NAHRLFGVSN ILKILNNLEP  60
PQKAEAMRSI IYEANVRDRH PVHGCLGLIF NLHLQIQHIQ LELDAINAQL SLHRHHHQLS  120
SSSSFPITAN TSNHLPFDTL PTLISIADSR TNIDVDNNKN VEAFWTHNSY DSGSTQTHSG  180
VEHEYDEISP YFDTVDEDPA CESSSELSLK DTVKSSKHAS ENELKGAAAC FTLTSVMNGG  240
FYDYINVITK LRRKMKSQTL THDGKNRLRD YKKALGLSLH LMDVCEVFHH NHKHREREFL  300
SIFTCYVNGS SSNFSEWHEQ ILIILGCLNL DLCLRIDEPT EPTVESSPEE KTLYENWECS  360
NCPSLMIMKS KIAKNIHKLV SANTKAREFL TSIEQQFNAS DKAIVGTLMT TLTTKRTLIF  420
LSRLDAEEYT FEFKIKTFSI MKNNVSIGSG ILCDDRGGEY YEKYDENGRS MGPFARFLQK  480
HGIVAQYTMP GMPQQNDIAK RSNRTILDIT GCMISDSTLP EFLWGEAIKT AMYILNREQE  540
FDIGIKDDPI TFLQAMESHE STQWKDAMKE ETTSMRKNDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3161107111LOB family transfactor Ramosa2.1
5ly0_B2e-3161107111LOB family transfactor Ramosa2.1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254KLRRKM
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-41LOB domain-containing protein 27