PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s756061g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 338aa    MW: 36396.7 Da    PI: 8.3167
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s756061g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.31.9e-4244119176
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        +CqvegC++dl+ ak y+ rhkvC +hsk+p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  PDK_30s756061g001  44 RCQVEGCKVDLTGAKAYYCRHKVCGMHSKSPRVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 119
                        6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575115No hitNo description
Gene3DG3DSA:4.10.1100.104.2E-3538106IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.22342119IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-4043123IPR004333Transcription factor, SBP-box
PfamPF031102.2E-3245118IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MERGCSSSLA VSGACGSNDS PHGLKFGKKI YFEDGVAGGQ QPPRCQVEGC KVDLTGAKAY  60
YCRHKVCGMH SKSPRVIVAG LEQRFCQQCS RFHQLPEFDQ GKRSCRRRLA GHNERRRKPP  120
PGSLSSHIGR LSSSFHEDNS RFRGFLMDFT HPRLPGTTQE VWPTVRAGDR MPGHQWQGSL  180
GGPPPSEVAP HGARRYMQVS TGGALFSPPE IPPSECLSGA SDSSCALSLL STQPWGSTAT  240
RNDRAPTIPA SSSFGGAPMA QPVISNHYVA SSWGFKGHEG GSSSLGVQHD LGLGPVSQPD  300
DGQFSGELEL ALQGSRQCMD LDPSRAYGHT DDVIHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29451181184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782879.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0572e-89SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A2H3XF460.0A0A2H3XF46_PHODC; squamosa promoter-binding-like protein 17
STRINGXP_008782879.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-50squamosa promoter binding protein-like 9