PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s749591g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 332aa    MW: 36710.6 Da    PI: 8.5051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s749591g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.1e-151663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed +l ++v+++G g+W+++ +   + R++k+c++rw ++l
  PDK_30s749591g002 16 KGPWTAVEDAILMEYVRKHGEGSWNAVQKNTELARCGKSCRLRWANHL 63
                       79******************************************9986 PP
2Myb_DNA-binding51.52.4e-1669112146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  PDK_30s749591g002  69 KGAFSPDEELLILRLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 112
                        799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7871163IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-221266IPR009057Homeodomain-like
SuperFamilySSF466896.74E-2913110IPR009057Homeodomain-like
SMARTSM007171.2E-111565IPR001005SANT/Myb domain
PfamPF002494.0E-141663IPR001005SANT/Myb domain
CDDcd001675.81E-101863No hitNo description
PROSITE profilePS5129424.65864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2467117IPR009057Homeodomain-like
SMARTSM007171.4E-1568116IPR001005SANT/Myb domain
PfamPF002493.4E-1569112IPR001005SANT/Myb domain
CDDcd001671.58E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTRSDGGGSR DGGLKKGPWT AVEDAILMEY VRKHGEGSWN AVQKNTELAR CGKSCRLRWA  60
NHLRPNLKKG AFSPDEELLI LRLHAQLGNK WARMAAHLPG RTDNEIKNYW NTRIKRRQRA  120
GLPLYPSDIQ RELALKRQRL HRNHPPSTNP LAPILTNNTT ITHFSSPPSS LLDPTGCLST  180
PTSTTFNVPL PPPGHHLPFP SRSMFHPQQP QQQQMEFNFG TFGLNSHPLP PPVFPNKMEL  240
PSTQTFTELP FSGGLLDTLL QEVQAGGDLQ SNGLLPELVS GDQDVKWNHL CVGCASGEGS  300
GCKGVTSPQD GLMESDAKWA DWNWSIGEPC LA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141175107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775421.10.0transcription factor MYB101-like
TrEMBLA0A2H3WXZ80.0A0A2H3WXZ8_PHODC; transcription factor MYB101-like
STRINGXP_008775421.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-69myb domain protein 101