PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s749221g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 24197.6 Da PI: 9.47 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.2 | 1.6e-53 | 3 | 129 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePwdLp k++++ek+ yfF+ rd+ky+tg r+nrat++gyWkatgkdke+ PDK_30s749221g001 3 LPPGFRFHPTDEELITHYLYKKVIDASFSA-RAIGEVDLTKSEPWDLPFKASTGEKDGYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI 93 79**************************99.89***************99999999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++ l+g+kktLvfy+gra+k ekt+Wvmheyrle PDK_30s749221g001 94 HR-GKILIGMKKTLVFYRGRASKVEKTNWVMHEYRLE 129 *9.99******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-60 | 2 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.182 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-29 | 4 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDLPPGFRFH PTDEELITHY LYKKVIDASF SARAIGEVDL TKSEPWDLPF KASTGEKDGY 60 FFCVRDRKYP TGLRTNRATE AGYWKATGKD KEIHRGKILI GMKKTLVFYR GRASKVEKTN 120 WVMHEYRLEG KTSVHNLCRT KMNEWVICKV FHKNSGEKKD AELVEMGSWF EDGLDSALRA 180 PLMNEHYSRK NKASSTSIST HMTCFSNALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 1 | 159 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 1 | 159 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 1 | 159 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008780433.1 | 1e-156 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 5e-98 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2H3X9R1 | 1e-155 | A0A2H3X9R1_PHODC; NAC domain-containing protein 79 | ||||
STRING | XP_008780433.1 | 1e-156 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 1e-100 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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