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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s747141g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 254aa MW: 29478.2 Da PI: 4.5539 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.6e-19 | 39 | 92 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ +LAk lgL+ rqV +WFqNrRa++k PDK_30s747141g001 39 KKRRLTADQVQFLEKNFTLENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 92 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.7 | 1.2e-41 | 38 | 128 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE++F+ e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+EkdyeaLk++yd lk+++e+L ke+e+L+ee+ PDK_30s747141g001 38 EKKRRLTADQVQFLEKNFTLENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYEALKSSYDVLKADHENLLKEKEKLKEEV 128 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-19 | 31 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 34 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-17 | 37 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.05E-16 | 39 | 95 | No hit | No description |
Pfam | PF00046 | 2.0E-16 | 39 | 92 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 40 | 101 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.2E-6 | 65 | 74 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 69 | 92 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.2E-6 | 74 | 90 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.1E-15 | 94 | 135 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMDIDNAHGI TTERSFCRPL ELEETGEENL EEFFHQTEKK RRLTADQVQF LEKNFTLENK 60 LEPERKIQLA KDLGLQPRQV AIWFQNRRAR WKTKQMEKDY EALKSSYDVL KADHENLLKE 120 KEKLKEEVLF LTEKLLQREK GDLQTYEIKV PPPLLQKLDF VSVSEEKKPD VHVLLCKPED 180 LSSANSTVSD SDSPRCTDGL LSPLLEPADT SNVFDQAGLS HADEDEEIKG CSFLKLEENS 240 CNYILPVDDQ AFWF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 86 | 94 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775589.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 3e-40 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2H3WYE4 | 0.0 | A0A2H3WYE4_PHODC; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_008775589.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16055 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 5e-35 | homeobox 1 |
Publications ? help Back to Top | |||
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