PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s745031g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 359aa    MW: 39969.2 Da    PI: 5.4493
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s745031g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.99.9e-29130190158
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        ldDg++WrKYGqK++ g+++pr+YYrCt++   gC + k+v+rs+edp++++itY+g+H++
  PDK_30s745031g002 130 LDDGFSWRKYGQKDILGAQHPRGYYRCTYRksqGCLAMKQVQRSDEDPTIFDITYRGTHTC 190
                        59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-28120190IPR003657WRKY domain
PROSITE profilePS5081123.433125188IPR003657WRKY domain
SuperFamilySSF1182904.97E-25128190IPR003657WRKY domain
SMARTSM007742.5E-40130192IPR003657WRKY domain
PfamPF031061.5E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEKGTSSWDL SLLLQVLTQG EEQTGQLEAQ LDEPSSAELR KSLAQQIRFS FSKAISMAKS  60
ISSEGSQQPP CPNNTSSGSL RSASGSPRSE NSERAFKEHE RREMSKKRKT LARWTNQVRV  120
SSAANAEGPL DDGFSWRKYG QKDILGAQHP RGYYRCTYRK SQGCLAMKQV QRSDEDPTIF  180
DITYRGTHTC LQGLRVHSAL APQEPDMQQN QQNPAADHDL QHPQHDQQLL ESFRTGLKVK  240
TEGLEKEDQV PTSSSFFAST PVSSFKSENQ IFSAPPTLEN NYMGSFCPSF FSPTSSESNY  300
FSVPCQMNFG GRTSEPDLTE IISAATSVTS SPMVDIDFML EPQMDIGANF SFDSSNFFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19130190868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783826.10.0probable WRKY transcription factor 41
TrEMBLA0A2H3XHR70.0A0A2H3XHR7_PHODC; probable WRKY transcription factor 41
STRINGXP_008783826.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-44WRKY family protein