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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PDK_30s741891g004 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 263aa MW: 27890.7 Da PI: 7.2221 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.5 | 0.00021 | 115 | 137 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ Cg+ F ++ L H +H
PDK_30s741891g004 115 YRCSRCGRAFDTRQALGGHRASH 137
9***************9999888 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 3.32E-5 | 113 | 141 | No hit | No description |
| Pfam | PF13912 | 8.3E-9 | 114 | 139 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.655 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 263 aa Download sequence Send to blast |
MSASQPSLPP SCLLAGGGGL GGDGGDDNPR RGHLPLTHAV DANPAFPDEE ENPDPNPNDG 60 NDYDPTSAAF VGAAPWRKKK RAGINPTLQC PPESEEVAAS LERLSGREGA WVKRYRCSRC 120 GRAFDTRQAL GGHRASHRSV KGCHAKSKHE GTNYGNGDHG MRNGRPGGHA GKGGIEVKIG 180 QRRRRGRWKT SAEAAAAETA KETATDTLVQ TAEKAAAEEV AAVTERRGLL LDLNLPAPPE 240 DKNDDLSSGI IDLNKKLPSQ DDE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| STRING | XP_008781368.1 | 1e-148 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP13010 | 27 | 29 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G35280.1 | 2e-09 | C2H2-like zinc finger protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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