PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 314aa MW: 34732.1 Da PI: 7.5272

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s740011g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G g+W++++ g+ R+ k+c++rw +yl PDK_30s740011g001 14 KGPWTAEEDIILVSYIQEHGAGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	46.1	1.1e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l PDK_30s740011g001 67 RGNFTPHEQGIIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.4E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.776	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.40E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.618	66	116	IPR017930	Myb domain
Pfam	PF00249	6.5E-13	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.67E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGRPPCCDKV GIKKGPWTAE EDIILVSYIQ EHGAGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEQGIIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKFKKYQ 120 TAIDSSMISS DSGASCHEQM SKGYSMEGRI RIPGLTASHS PTSRFYQSPS TYTSNTENIS 180 RLLEGWMWSL PKSAQDMHQQ STIIDSDGNE SLQGSQAKGD RWSCAAIAKD DHDSLLSFEN 240 LSSIAWEKSS SSSLHSVLQG TQLAPADAEA KRGVADGAQQ PPLSLLEKWL LDDTSGLVDG 300 LMELPADCFS SPML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-23	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008790473.1	0.0	myb-related protein 306-like isoform X1
Swissprot	B3VTV7	1e-110	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A2H3XY87	0.0	A0A2H3XY87_PHODC; myb-related protein 306-like isoform X1
STRING	XP_008790473.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	3e-94	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]