PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s733901g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32922.9 Da    PI: 5.264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s733901g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1888141356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++++eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  PDK_30s733901g001  88 KKRRLNSEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 141
                        45689************************************************9 PP
2HD-ZIP_I/II130.85.5e-4287177191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl++eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++a+++en++L++++++L++e+
  PDK_30s733901g001  87 EKKRRLNSEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEAIRSENDALQAQNKKLQAEI 177
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-2078145IPR009057Homeodomain-like
PROSITE profilePS5007117.68683143IPR001356Homeobox domain
SMARTSM003895.7E-1886147IPR001356Homeobox domain
PfamPF000466.0E-1688141IPR001356Homeobox domain
CDDcd000865.10E-1688144No hitNo description
Gene3DG3DSA:1.10.10.601.2E-1990150IPR009057Homeodomain-like
PRINTSPR000319.0E-6114123IPR000047Helix-turn-helix motif
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PRINTSPR000319.0E-6123139IPR000047Helix-turn-helix motif
PfamPF021837.6E-15143183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MACNGMASSS FFPPNFMLQM QTPHEEEHLP PTSFNSILPT TPCTNLQDFR GVGPMLGKRS  60
MPYSGIETCE EMNAEDDLSD DCSQAGEKKR RLNSEQVRTL EKNFELGNKL EPERKMQLAR  120
ALGLQPRQVA IWFQNRRARW KTKQLEKDYD VLKRQFEAIR SENDALQAQN KKLQAEILVL  180
KGRETSELIN LNKETEGSCS NRSENSSEIN LDISRTSAIE SPLNPHQSIP LFPSIRPADI  240
DQLLQSSSRP ELQYPKIEQG VPDGSLSNLL CSMEDQSSFW PWSDHHSFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797128.10.0homeobox-leucine zipper protein HOX21
SwissprotA2XD081e-105HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
TrEMBLA0A2H3YDS20.0A0A2H3YDS2_PHODC; homeobox-leucine zipper protein HOX21
STRINGXP_008797128.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-97HD-ZIP family protein