PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PDK_30s733601g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 178aa MW: 20237.8 Da PI: 3.5662

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s733601g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	50	75	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ PDK_30s733601g001 50 PGEPDCIYYLRTGLCGYGSNCRYNHP 75 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.441	49	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	49	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-9	51	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.81E-6	54	75	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	55	74	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MPDTMPVLSN AAADSSDACQ DNLEEAMWQL KVEDRKVGDD ARLNPYPDRP GEPDCIYYLR 60 TGLCGYGSNC RYNHPTYIRQ GRRRGGEPPE RDGQPDCQDD NDNNNDDDDD DDDDDVDDHD 120 DDDNDNNNND NDDNNDDDND DYDDDDDDDD YDDDDAVQLV LKFVMNFCPT KKCLLGTS

Functional Description ? help Back to Top
Source	Description
UniProt	Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269\|PubMed:18582464}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803512.1	4e-66	zinc finger CCCH domain-containing protein ZFN-like isoform X1
Swissprot	Q94AD9	1e-20	C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2H3YTC1	8e-65	A0A2H3YTC1_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRING	XP_008803512.1	1e-65	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25763	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	6e-20	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]