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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s731801g007 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 30737.3 Da PI: 10.3324 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s731801g007 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 318.7 | 1.9e-97 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllv 87
mdd+g rn+gyye+ k nlglqlmss+ erd+ +n + +++ ++ m+f rd ++++ +rdnk+l++l++
PDK_30s731801g007 1 MDDEGGLGiRNWGYYEQP--SKGNLGLQLMSSMVERDTTKpLLSNGGFLHRECSMVVEPsvpMDF-VRDGWIHH------NRDNKILHVLPA 83
999999999*******99..799**************8665566666666666554444567***.9******9......9**********8 PP
GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
++ +++++l++ +++ ++ l+++ + k ++ p+ e + + +e++ kkr+++++ k++k kk+kk ++ +
PDK_30s731801g007 84 NHH-----HPNYGMLPDPPGAHTFHM-----LQPPEPP-----KDDKVPMMEDPGSRNETPL-KKRSQGRSLKSPKPKKPKKVA--APRDGA 157
774.....56799*********9999.....5555555.....3456777776776666655.5599999************43..446777 PP
GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
++++ +r ka kks++lv+ng++lD+s++P+PvCsCtG l+qCY+WG GGWqSaCCtt+iS +PLP+stkrrgaRiagrKmSqgafkk+Lek
PDK_30s731801g007 158 TNGSVSRGKAGKKSTGLVINGIDLDISGIPTPVCSCTGRLQQCYRWGVGGWQSACCTTSISCHPLPMSTKRRGARIAGRKMSQGAFKKVLEK 249
777679************************************************************************************** PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
La+eGy+lsnp+DL+++WAkHGtnkfvtir
PDK_30s731801g007 250 LAGEGYNLSNPIDLRTFWAKHGTNKFVTIR 279
*****************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDEGGLGIR NWGYYEQPSK GNLGLQLMSS MVERDTTKPL LSNGGFLHRE CSMVVEPSVP 60
MDFVRDGWIH HNRDNKILHV LPANHHHPNY GMLPDPPGAH TFHMLQPPEP PKDDKVPMME 120
DPGSRNETPL KKRSQGRSLK SPKPKKPKKV AAPRDGATNG SVSRGKAGKK STGLVINGID 180
LDISGIPTPV CSCTGRLQQC YRWGVGGWQS ACCTTSISCH PLPMSTKRRG ARIAGRKMSQ 240
GAFKKVLEKL AGEGYNLSNP IDLRTFWAKH GTNKFVTIR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
