PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s728141g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 717aa MW: 80565.7 Da PI: 6.5735

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s728141g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.9	2.6e-34	469	523	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+ PDK_30s728141g003 469 KQRMRWTPELHECFVEAVNKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 523 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03767	2.4E-41	43	205	IPR005519	Acid phosphatase, class B-like
SuperFamily	SSF56784	1.48E-18	103	208	IPR023214	HAD-like domain
Gene3D	G3DSA:3.40.50.1000	2.3E-15	104	194	IPR023214	HAD-like domain
PROSITE profile	PS51294	13.551	466	526	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-18	467	523	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-32	468	525	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.5E-26	469	523	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-10	471	522	IPR001005	SANT/Myb domain
Pfam	PF14379	4.7E-9	554	575	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	1.1E-8	593	618	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MEKRRAETLL LFFIFSIAVV AGDWNILSYM AKKRDHHQVG ISLKNYCESW RMNAELNNIR 60 CFDVVPGECV GYIGKYMTST QYKVDVQRAA EEATLFLTNS FLLGGDGKDA WVFDIDDTLL 120 STVPYFKKHQ FGGATTNRTS MEQWMEERSA PAVEHMLNLY HQIRARGLKV FLISSRREHL 180 RDATIDNLVK VGYLGWAELI LRCKRHYKLD IDLGLGQEHR GSIALVDCAQ LLKRVPLQLS 240 HLSLEENIFK MFCASDAKVT MERELRSDPM APLHTPYVKN NGVAEPFFST ASGFSLDVHC 300 TSVPPYERQP VSASYISQPS SSALSLSSTY SSYSGTCQPS MSNYPKESAE ITWYSDSLQG 360 VLDYSDNVNT VNDQIQSNCV MTSDNLIKQN EWPDLTDLMN GDWGEFLDNR DATEPQPKAS 420 DLHVVYPAAQ ASTDSSAYHS QIYESVHSHS GEQCAVGSLS SSANAAPAKQ RMRWTPELHE 480 CFVEAVNKLG GSEKATPKGV LKLMNVEGLT IYHVKSHLQK YRTARYRPES SEGTSAKKIT 540 PLEEMPSLDL KTGIEITKAL RLQMEVQKRL HEQLEPLKKS EAGHHYPFLQ TIHIQRKLQL 600 QIEEQGKYLQ MMFEKQGKAG SDKLKAPSNE EDPSSQYSDL SHNVTKDGIS EKDRAETENG 660 PSGASILEEC SRQVGDKQKI VEPDADMRSN TIRSHSSPHK RARSHDADVS SATSAFY

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MEKRRAETLL LFFIFSIAVV AGDWNILSYM AKKRDHHQVG ISLKNYCESW RMNAELNNIR  60
CFDVVPGECV GYIGKYMTST QYKVDVQRAA EEATLFLTNS FLLGGDGKDA WVFDIDDTLL  120
STVPYFKKHQ FGGATTNRTS MEQWMEERSA PAVEHMLNLY HQIRARGLKV FLISSRREHL  180
RDATIDNLVK VGYLGWAELI LRCKRHYKLD IDLGLGQEHR GSIALVDCAQ LLKRVPLQLS  240
HLSLEENIFK MFCASDAKVT MERELRSDPM APLHTPYVKN NGVAEPFFST ASGFSLDVHC  300
TSVPPYERQP VSASYISQPS SSALSLSSTY SSYSGTCQPS MSNYPKESAE ITWYSDSLQG  360
VLDYSDNVNT VNDQIQSNCV MTSDNLIKQN EWPDLTDLMN GDWGEFLDNR DATEPQPKAS  420
DLHVVYPAAQ ASTDSSAYHS QIYESVHSHS GEQCAVGSLS SSANAAPAKQ RMRWTPELHE  480
CFVEAVNKLG GSEKATPKGV LKLMNVEGLT IYHVKSHLQK YRTARYRPES SEGTSAKKIT  540
PLEEMPSLDL KTGIEITKAL RLQMEVQKRL HEQLEPLKKS EAGHHYPFLQ TIHIQRKLQL  600
QIEEQGKYLQ MMFEKQGKAG SDKLKAPSNE EDPSSQYSDL SHNVTKDGIS EKDRAETENG  660
PSGASILEEC SRQVGDKQKI VEPDADMRSN TIRSHSSPHK RARSHDADVS SATSAFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-30	468	527	1	60	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796363.1	0.0	protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
Refseq	XP_026662295.1	0.0	protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
TrEMBL	A0A2H3YBR0	0.0	A0A2H3YBR0_PHODC; protein PHOSPHATE STARVATION RESPONSE 2-like isoform X1
STRING	XP_008796363.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1971	37	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	3e-69	G2-like family protein