PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s721101g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 322aa    MW: 36143.8 Da    PI: 8.6724
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s721101g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+ + +q+G+g +W + ++++g++R++k+c++rw++yl
  PDK_30s721101g001 14 KGPWSPEEDAKLKSYMEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding36.61.1e-1169111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PDK_30s721101g001  69 GGFSEEEDNIICSLYLAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.156962IPR017930Myb domain
SuperFamilySSF466891.8E-2611109IPR009057Homeodomain-like
SMARTSM007174.2E-121364IPR001005SANT/Myb domain
PfamPF002493.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-251569IPR009057Homeodomain-like
CDDcd001674.69E-91662No hitNo description
PROSITE profilePS5129420.73363117IPR017930Myb domain
SMARTSM007171.3E-1067115IPR001005SANT/Myb domain
PfamPF002492.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2370117IPR009057Homeodomain-like
CDDcd001673.20E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKE NVKKGPWSPE EDAKLKSYME QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYLAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QHKNQQQARR VCRRNQRTKE SKDGNAMSAK KGNDNSYWPM PPILTGQFNQ VDRHASDDHG  180
STKNFLTNLD GEFCFHGRAE QGISLASPLE QQHLNRNSVG SIALPEQAKY FIDGYSPSGY  240
RLSQGLDELD EMFCGNSVKL QGLDCFFGAW NMVAENNGTS TSGSMNWNNV SPLIYPPAVT  300
SYQGMQQQCL PDELVHLLGA QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010936298.10.0transcription factor RAX3-like
TrEMBLA0A2H3XMB31e-164A0A2H3XMB3_PHODC; transcription repressor MYB5
STRINGXP_008790308.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.18e-76myb domain protein 84