PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s720441g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 263aa    MW: 29493 Da    PI: 9.6741
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s720441g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox491e-152383357
                       --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++ +t+eq ++L +l+++   r p+ e++++++++l    +++ ++V++WF N +a+e++
  PDK_30s720441g001 23 AKWIPTNEQARILRDLYHNhgVRSPNVEQIQKISSRLrqygKIEGKNVFYWFSNYKARERR 83
                       689***************8779*************************************97 PP
2Wus_type_Homeobox932.7e-302185265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++++W Pt+eQ +iL++ly+ +G+r+Pn e+iq+i+++L++yGkie+kNVfyWF N kaRer+k+
  PDK_30s720441g001 21 SSAKWIPTNEQARILRDLYHnHGVRSPNVEQIQKISSRLRQYGKIEGKNVFYWFSNYKARERRKK 85
                       6789***************979*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-91588IPR009057Homeodomain-like
PROSITE profilePS500719.6371884IPR001356Homeobox domain
SMARTSM003897.3E-42088IPR001356Homeobox domain
PfamPF000462.5E-132383IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-52684IPR009057Homeodomain-like
CDDcd000864.52E-42885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKHQSISVDG SKSDPLKSRQ SSAKWIPTNE QARILRDLYH NHGVRSPNVE QIQKISSRLR  60
QYGKIEGKNV FYWFSNYKAR ERRKKRLSVD FPSSSSSSNT TTTPGADATC ASPGLHAVGQ  120
MGSCECPGSV LTEKSYKGYF MSRGGGEAVL ERNRGWATGL EPPAMSHYTR VQKAKTTHAE  180
TRTLPLFPIH TPEQEKVEEE EHQEGKQREE GGVRSSVAGT PQQPKPIGRI PAFNLDDGRQ  240
RQEDHCCLEL TLDSYRHVPL RST
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665354.17e-82protein WUSCHEL-like
TrEMBLA0A3Q0IER32e-80A0A3Q0IER3_PHODC; protein WUSCHEL-like
STRINGXP_008807610.13e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-29WOX family protein