PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s719501g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 338aa    MW: 37975.8 Da    PI: 7.4913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s719501g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.52.1e-091640125
                NAM  1 lppGfrFhPtdeelvveyLkkkveg 25
                       lppGfrFhPtdee++++yL +k++ 
  PDK_30s719501g001 16 LPPGFRFHPTDEEIITHYLSQKAKM 40
                       79*******************9875 PP
2NAM111.78.3e-353811651129
                NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +k +ekewyfF++rd+ky+tg+r+nrat++gyWkatgkdke+++ +g lvg+kktLvfykgrapkgek++Wvmhe+rle
  PDK_30s719501g001  38 AKMGEKEWYFFCQRDRKYPTGTRTNRATEAGYWKATGKDKEIYRGRGVLVGMKKTLVFYKGRAPKGEKSNWVMHEFRLE 116
                        566899**********************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.5461140IPR003441NAC domain
SuperFamilySSF1019411.57E-5012141IPR003441NAC domain
PfamPF023652.1E-2817115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVDAPVLNKG EDGMDLPPGF RFHPTDEEII THYLSQKAKM GEKEWYFFCQ RDRKYPTGTR  60
TNRATEAGYW KATGKDKEIY RGRGVLVGMK KTLVFYKGRA PKGEKSNWVM HEFRLEGKAP  120
CFNLPKTAKD AWVVCRVFHK NIGIKKSPVP GLERMSSFGD DFLDSSTLPP LLDPPYYNSN  180
IRPSPSCIND GEGFEFKGIP TSSPSMPSYY SMLGVENRQG ISPQASSANQ HQNAVYYPQV  240
PPQSPYFSLP EAPNLGYLHQ DDAMLRALAA TNDASSAIRR TCKVEQYSNQ SMVSPSQDTG  300
LSTDRNTEIS SVVSKHYDDF DDPCSAGPVM DLENMWKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-401414615171NO APICAL MERISTEM PROTEIN
1ut4_B5e-401414615171NO APICAL MERISTEM PROTEIN
1ut7_A5e-401414615171NO APICAL MERISTEM PROTEIN
1ut7_B5e-401414615171NO APICAL MERISTEM PROTEIN
3swm_A5e-401414618174NAC domain-containing protein 19
3swm_B5e-401414618174NAC domain-containing protein 19
3swm_C5e-401414618174NAC domain-containing protein 19
3swm_D5e-401414618174NAC domain-containing protein 19
3swp_A5e-401414618174NAC domain-containing protein 19
3swp_B5e-401414618174NAC domain-containing protein 19
3swp_C5e-401414618174NAC domain-containing protein 19
3swp_D5e-401414618174NAC domain-containing protein 19
4dul_A5e-401414615171NAC domain-containing protein 19
4dul_B5e-401414615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782762.10.0NAC domain-containing protein 100-like isoform X1
SwissprotQ9FLJ25e-89NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2H3XF290.0A0A2H3XF29_PHODC; NAC domain-containing protein 100-like isoform X1
STRINGXP_008782760.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-84NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]