PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s718521g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 290aa    MW: 31884.2 Da    PI: 9.7547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s718521g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.6e-12555146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                       +++WT eE+e l  +v ++G g W+tI +         +R+  ++k++w++
  PDK_30s718521g002  5 KQKWTSEEEEALRAGVDKHGAGKWRTIQKDPEfshclATRSNIDLKDKWRN 55
                       79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.422161IPR017930Myb domain
SuperFamilySSF466899.33E-16258IPR009057Homeodomain-like
SMARTSM007172.1E-7459IPR001005SANT/Myb domain
PfamPF002491.6E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-14556IPR009057Homeodomain-like
CDDcd116606.66E-21656No hitNo description
SuperFamilySSF467854.68E-10111206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005269.8E-5112190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.9E-10113197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150417.886114195IPR005818Linker histone H1/H5, domain H15
PfamPF005382.7E-5116188IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRAGV DKHGAGKWRT IQKDPEFSHC LATRSNIDLK DKWRNMSVSA  60
SGHGSREKIR TPKVKGLPAI PSSNSQNLTV SALKKDDGVQ AMVDSTKNSQ DGKNPPRYTA  120
MIIEALAAMQ EPNGSEIGAI CSFIEGSDNP ANLLREIQQQ NDVPQNFRRL LSSKLRRLVA  180
QNKIEKVQRG YRLKDSSFAT KTPTPKQKDP ANRSKLPQNS GSCNAINPVE DAAITAAYKI  240
ADAEAKSFFA SEAIKEAEKI SKMAEETDSL LLLAKEIFER CARGEIMTLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945241e-51FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797902.10.0single myb histone 4-like
SwissprotQ6WLH42e-90SMH3_MAIZE; Single myb histone 3
TrEMBLA0A2H3YFB20.0A0A2H3YFB2_PHODC; single myb histone 4-like
STRINGXP_008797902.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-57MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]