PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s717131g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 483aa MW: 54782.8 Da PI: 4.6845

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s717131g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	51.8	2.7e-16	85	177	38	128
NAM 38 diykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125 +++++ P+ + k ++e+ wy F ++d ++ +g+ + ++t++gyWk+ + +l+ ++ +vg k+t fy g+ap+g+kt+W+mhe PDK_30s717131g001 85 HVMNIRPRIWNqKsisDRPTQEDMWYLFNPEDPQSLNGDCEFKVTRTGYWKSMDDLR-ILT-STPTVGRKTTREFYIGKAPHGNKTQWMMHE 174 556666655542222222236779*************************987655.555.5889************************ PP NAM 126 yrl 128 y++ PDK_30s717131g001 175 YQA 177 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	7.5E-10	18	176	IPR003441	NAC domain
PROSITE profile	PS51005	22.171	47	200	IPR003441	NAC domain
SuperFamily	SSF101941	4.05E-20	104	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MCPSAPFSVP LDINASSTDE ELVLFLGGRK VGDPVPDNVI TEAPLMNFFL LRYVRCCQER 60 DLADLRHSCK FDVGLPEKSL PQCGHVMNIR PRIWNQKSIS DRPTQEDMWY LFNPEDPQSL 120 NGDCEFKVTR TGYWKSMDDL RILTSTPTVG RKTTREFYIG KAPHGNKTQW MMHEYQAEQK 180 TRQGINIEQD HCSLCRVFLQ IDERPNHEEQ HNSIIADAAD GDYLECVLLN LLEQEENNLS 240 SRDAVNRSQY TYIYFGFYII PRQMVGRDQQ GQSVLSGASV TGPETDSSAE DVYATCDFSK 300 GDYLELNDLY SPGTSSSSSD NSSLMSVNSD ECFDADALLR DIENEHIPRV EEEHVDCRYS 360 VSASIKTNQV VIRPPPAQPF ELCNMLGLVI QQIIFFELKT CQSLITLNAC AVGHWAFAPQ 420 EFWSKDTPKY EIYGRVWILC NVNFAPPSAI PLWIATILSI LMMGGSHLSW KHVHVLFNAT 480 FAP

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MCPSAPFSVP LDINASSTDE ELVLFLGGRK VGDPVPDNVI TEAPLMNFFL LRYVRCCQER  60
DLADLRHSCK FDVGLPEKSL PQCGHVMNIR PRIWNQKSIS DRPTQEDMWY LFNPEDPQSL  120
NGDCEFKVTR TGYWKSMDDL RILTSTPTVG RKTTREFYIG KAPHGNKTQW MMHEYQAEQK  180
TRQGINIEQD HCSLCRVFLQ IDERPNHEEQ HNSIIADAAD GDYLECVLLN LLEQEENNLS  240
SRDAVNRSQY TYIYFGFYII PRQMVGRDQQ GQSVLSGASV TGPETDSSAE DVYATCDFSK  300
GDYLELNDLY SPGTSSSSSD NSSLMSVNSD ECFDADALLR DIENEHIPRV EEEHVDCRYS  360
VSASIKTNQV VIRPPPAQPF ELCNMLGLVI QQIIFFELKT CQSLITLNAC AVGHWAFAPQ  420
EFWSKDTPKY EIYGRVWILC NVNFAPPSAI PLWIATILSI LMMGGSHLSW KHVHVLFNAT  480
FAP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	106	198	70	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	106	198	70	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	106	198	70	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	106	198	70	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	106	198	73	166	NAC domain-containing protein 19
3swm_B	1e-15	106	198	73	166	NAC domain-containing protein 19
3swm_C	1e-15	106	198	73	166	NAC domain-containing protein 19
3swm_D	1e-15	106	198	73	166	NAC domain-containing protein 19
3swp_A	1e-15	106	198	73	166	NAC domain-containing protein 19
3swp_B	1e-15	106	198	73	166	NAC domain-containing protein 19
3swp_C	1e-15	106	198	73	166	NAC domain-containing protein 19
3swp_D	1e-15	106	198	73	166	NAC domain-containing protein 19
4dul_A	1e-15	106	198	70	163	NAC domain-containing protein 19
4dul_B	1e-15	106	198	70	163	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806192.1	0.0	NAC transcription factor 25-like isoform X1
Refseq	XP_008806193.1	0.0	NAC transcription factor 25-like isoform X1
Refseq	XP_026665023.1	0.0	NAC transcription factor 25-like isoform X1
Refseq	XP_026665024.1	0.0	NAC domain-containing protein 35-like isoform X4
TrEMBL	A0A2H3YZI3	0.0	A0A2H3YZI3_PHODC; NAC transcription factor 25-like isoform X1
TrEMBL	A0A3Q0IDV7	0.0	A0A3Q0IDV7_PHODC; NAC domain-containing protein 35-like isoform X4
STRING	XP_008806190.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10916	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	2e-19	NAC domain containing protein 28