PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s713921g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HSF

Protein Properties

Length: 439aa MW: 49779.1 Da PI: 9.3889

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s713921g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.3	1e-32	1	85	9	102
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100 +++d+++++++sws+ +nsfvv+d+++fa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ikr+ PDK_30s713921g001 1 MVDDPSTDRVVSWSRGNNSFVVWDPHTFATSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKTIKRR 83 899*****************************************************999.........*******************9 PP XX CS HSF_DNA-bind 101 ks 102 k PDK_30s713921g001 84 KP 85 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-34	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-49	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.13E-31	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.7E-29	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-10	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-10	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF09742	1.3E-6	260	414	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MVDDPSTDRV VSWSRGNNSF VVWDPHTFAT SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD 60 KWEFANEGFL RGQKHLLKTI KRRKPPSHPP SQQQTLGQYL EVGRFGLEGE INRLKRDKQL 120 LMAEVVKLRQ VQQNTKAHLK AMEERIQGTE QKQQRMMAFL ARVIQNPNYL QQLVNENERQ 180 KELEEAISKK RRRPIDRAPE NDDVGTSGNQ KLEMPMKIEV LESLQDLNQD DVSDLESMAK 240 EIQGVGRGKI ESLKDLVTLS VWAQNNYQTR HLAKILIHLV WCLQDSMSIS AGSPAVYRKA 300 VNAAYISSVF LKFMIENAKS DKFEELCLDL AKDEKGKHDL PIEQSVEAFV MRGMLSFIGA 360 SDLCSGPSPG PKDVHPCIDA AMLQDSAVVA SVVRRLLLNF INRPRIPFNG SSYPIISEGS 420 QPGVLQRVGS AAGMMIPYL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MVDDPSTDRV VSWSRGNNSF VVWDPHTFAT SLLPRYFKHN NFSSFVRQLN TYGFRKVDPD  60
KWEFANEGFL RGQKHLLKTI KRRKPPSHPP SQQQTLGQYL EVGRFGLEGE INRLKRDKQL  120
LMAEVVKLRQ VQQNTKAHLK AMEERIQGTE QKQQRMMAFL ARVIQNPNYL QQLVNENERQ  180
KELEEAISKK RRRPIDRAPE NDDVGTSGNQ KLEMPMKIEV LESLQDLNQD DVSDLESMAK  240
EIQGVGRGKI ESLKDLVTLS VWAQNNYQTR HLAKILIHLV WCLQDSMSIS AGSPAVYRKA  300
VNAAYISSVF LKFMIENAKS DKFEELCLDL AKDEKGKHDL PIEQSVEAFV MRGMLSFIGA  360
SDLCSGPSPG PKDVHPCIDA AMLQDSAVVA SVVRRLLLNF INRPRIPFNG SSYPIISEGS  420
QPGVLQRVGS AAGMMIPYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-22	1	83	36	129	Heat shock factor protein 1
5d5v_B	2e-22	1	83	36	129	Heat shock factor protein 1
5d5v_D	2e-22	1	83	36	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	82	LKTIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813499.1	1e-179	heat stress transcription factor A-2b-like
Swissprot	Q6VBB2	1e-117	HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBL	A0A2H3ZH90	1e-177	A0A2H3ZH90_PHODC; heat stress transcription factor A-2b-like
STRING	XP_008813499.1	1e-178	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	5e-91	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]