PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s711681g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 386aa    MW: 43365.1 Da    PI: 5.1748
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s711681g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind50.46.2e-16201212103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH........HSTT--HHHHH.HHHHHTTEEE---SSBTTTTXTTSEEEEES CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk........yFkhsnfaSFv.RQLnmYgFkkvkdeekkskskekiweFkhk 84 
                        Fl+k ye++ed++++ ++swse++nsfv++d+ +f +++Lpk            + + +Fv + L + gF+kv+ ++          eF+++
  PDK_30s711681g001  20 FLSKCYEMVEDPQTNGTVSWSETNNSFVIWDPATFCRDLLPKvvscsirdLLDGNMIDAFVfKNLTLKGFRKVDPDR---------YEFANE 102
                        9****************************************95555555455667788886599**********999.........78**** PP

                        XXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                         F +g+k+ l++i rkk +
  PDK_30s711681g001 103 GFLRGQKDVLKTITRKKPS 121
                        ****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.4E-2616118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-1817118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-2017118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-1420118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEVEKGGGGG SSLVPVVPPF LSKCYEMVED PQTNGTVSWS ETNNSFVIWD PATFCRDLLP  60
KVVSCSIRDL LDGNMIDAFV FKNLTLKGFR KVDPDRYEFA NEGFLRGQKD VLKTITRKKP  120
SHNAVQQHQS QGRNTSVKAC VEVGKFGPKE EIEMLKRDKN VLMQELVKLR QHQQNTDHEV  180
RILRQRIQGM EQHQQQMMSF LAMAVKSPGF VAQLMQQTGN NRWTEANKKR RLPALEQGAV  240
GSFQTSSDGQ IIRYQPFMPE TLRPSMSSMP NSVVSPNFQP MSNGVNDLST DVDVMSLEAN  300
SSLPPGGDIP LTEYIEQLLA SPISENHGQM EPESLEVPDF MLDFVLPEQE IQMETSKNMV  360
LPSEQMGGNH QASEKDDRHT ISEYGN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775686.10.0heat stress transcription factor A-1-like
SwissprotQ84T619e-90HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2H3WYL10.0A0A2H3WYL1_PHODC; heat stress transcription factor A-1-like
STRINGXP_008775686.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.17e-80heat shock transcription factor A1D
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]